Detailed information NTG0761038

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QKA38_RS06810
• Genome accession: NZ_CP124669
• Coordinates: 1447585..1448589 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2021CK-01494
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1442585..1453589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QKA38_RS06780 (QKA38_06780)	fghA	1442677..1443528 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
QKA38_RS06785 (QKA38_06785)	ispF	1443599..1444072 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QKA38_RS06790 (QKA38_06790)	truD	1444069..1445136 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
QKA38_RS06795 (QKA38_06795)	surE	1445124..1445873 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QKA38_RS06800 (QKA38_06800)	-	1445906..1446541 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QKA38_RS06805 (QKA38_06805)	-	1446587..1447480 (+)	894	WP_009313547.1	peptidoglycan DD-metalloendopeptidase family protein	-
QKA38_RS06810 (QKA38_06810)	rpoS	1447585..1448589 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QKA38_RS06815 (QKA38_06815)	fdxA	1449016..1449339 (-)	324	WP_003092272.1	ferredoxin FdxA	-
QKA38_RS06820 (QKA38_06820)	mutS	1449406..1451973 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QKA38_RS06825 (QKA38_06825)	-	1452099..1453106 (-)	1008	WP_023097298.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=761038 QKA38_RS06810 WP_003113871.1 1447585..1448589(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01494]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=761038 QKA38_RS06810 WP_003113871.1 1447585..1448589(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01494]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653