Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QKA38_RS00120 Genome accession   NZ_CP124669
Coordinates   28032..29057 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain 2021CK-01494     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 23032..34057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKA38_RS00095 (QKA38_00095) - 23221..23538 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  QKA38_RS00100 (QKA38_00100) trkA 23687..25060 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  QKA38_RS00105 (QKA38_00105) rsmB 25087..26391 (-) 1305 WP_023098286.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QKA38_RS00110 (QKA38_00110) fmt 26388..27332 (-) 945 WP_023098287.1 methionyl-tRNA formyltransferase -
  QKA38_RS00115 (QKA38_00115) def 27387..27893 (-) 507 WP_003097293.1 peptide deformylase -
  QKA38_RS00120 (QKA38_00120) tsaP 28032..29057 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QKA38_RS00125 (QKA38_00125) dprA 29192..30280 (+) 1089 WP_014602326.1 DNA-processing protein DprA Machinery gene
  QKA38_RS00130 (QKA38_00130) - 30321..30878 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  QKA38_RS00135 (QKA38_00135) - 30888..31865 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  QKA38_RS00140 (QKA38_00140) hemF 32056..32973 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  QKA38_RS00145 (QKA38_00145) aroE 33031..33855 (+) 825 WP_023098288.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=761020 QKA38_RS00120 WP_003097294.1 28032..29057(+) (tsaP) [Pseudomonas aeruginosa strain 2021CK-01494]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=761020 QKA38_RS00120 WP_003097294.1 28032..29057(+) (tsaP) [Pseudomonas aeruginosa strain 2021CK-01494]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGTTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393