Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OSZ60_RS13980 Genome accession   NZ_CP113230
Coordinates   2940251..2940808 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BIAI 160     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2935251..2945808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSZ60_RS13965 (OSZ60_13965) pilY1 2935343..2938834 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  OSZ60_RS13970 (OSZ60_13970) pilX 2938846..2939433 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  OSZ60_RS13975 (OSZ60_13975) pilW 2939430..2940254 (-) 825 WP_009875846.1 type 4a pilus minor pilin PilW -
  OSZ60_RS13980 (OSZ60_13980) pilV 2940251..2940808 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  OSZ60_RS13985 (OSZ60_13985) - 2940799..2941305 (-) 507 WP_033937816.1 GspH/FimT family pseudopilin -
  OSZ60_RS13990 (OSZ60_13990) - 2941411..2941920 (-) 510 WP_017002065.1 GspH/FimT family pseudopilin -
  OSZ60_RS13995 (OSZ60_13995) thiO 2942055..2943149 (+) 1095 WP_023108762.1 glycine oxidase ThiO -
  OSZ60_RS14000 (OSZ60_14000) pilR 2943195..2944532 (-) 1338 WP_017002067.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=760966 OSZ60_RS13980 WP_003119423.1 2940251..2940808(-) (pilV) [Pseudomonas aeruginosa strain BIAI 160]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=760966 OSZ60_RS13980 WP_003119423.1 2940251..2940808(-) (pilV) [Pseudomonas aeruginosa strain BIAI 160]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995