Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QKA52_RS21325 Genome accession   NZ_CP124667
Coordinates   4582360..4582689 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain 2021CK-01315     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4577360..4587689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKA52_RS21310 (QKA52_21310) uvrB 4578747..4580759 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  QKA52_RS21315 (QKA52_21315) - 4580947..4582143 (+) 1197 WP_033999626.1 amino acid aminotransferase -
  QKA52_RS21325 (QKA52_21325) comEA/comE1 4582360..4582689 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  QKA52_RS21330 (QKA52_21330) - 4582880..4584877 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QKA52_RS21335 (QKA52_21335) - 4584890..4585915 (-) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  QKA52_RS21340 (QKA52_21340) - 4586016..4586957 (-) 942 WP_099319968.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=760871 QKA52_RS21325 WP_003104586.1 4582360..4582689(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2021CK-01315]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=760871 QKA52_RS21325 WP_003104586.1 4582360..4582689(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2021CK-01315]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385