Detailed information NTG0760836

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QKA52_RS06990
• Genome accession: NZ_CP124667
• Coordinates: 1496746..1497750 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2021CK-01315
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1491746..1502750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QKA52_RS06960 (QKA52_06960)	fghA	1491838..1492689 (+)	852	WP_023115121.1	S-formylglutathione hydrolase	-
QKA52_RS06965 (QKA52_06965)	ispF	1492760..1493233 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QKA52_RS06970 (QKA52_06970)	truD	1493230..1494297 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
QKA52_RS06975 (QKA52_06975)	surE	1494285..1495034 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QKA52_RS06980 (QKA52_06980)	-	1495067..1495702 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QKA52_RS06985 (QKA52_06985)	-	1495748..1496641 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
QKA52_RS06990 (QKA52_06990)	rpoS	1496746..1497750 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QKA52_RS06995 (QKA52_06995)	fdxA	1498177..1498500 (-)	324	WP_003119354.1	ferredoxin FdxA	-
QKA52_RS07000 (QKA52_07000)	mutS	1498567..1501134 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
QKA52_RS07005 (QKA52_07005)	-	1501260..1502267 (-)	1008	WP_021265158.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=760836 QKA52_RS06990 WP_003113871.1 1496746..1497750(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01315]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=760836 QKA52_RS06990 WP_003113871.1 1496746..1497750(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01315]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653