Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QKA52_RS06100 Genome accession   NZ_CP124667
Coordinates   1300644..1301588 (+) Length   314 a.a.
NCBI ID   WP_031228494.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01315     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1295644..1306588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKA52_RS06075 (QKA52_06075) parA 1295885..1296523 (+) 639 WP_282414132.1 ParA family partition ATPase -
  QKA52_RS06080 (QKA52_06080) - 1296520..1296783 (+) 264 WP_282414133.1 chromosome partitioning protein ParB -
  QKA52_RS06085 (QKA52_06085) - 1296780..1297322 (+) 543 WP_282414134.1 DUF2840 domain-containing protein -
  QKA52_RS06090 (QKA52_06090) - 1297319..1297918 (+) 600 WP_282414135.1 S26 family signal peptidase -
  QKA52_RS06095 (QKA52_06095) - 1298367..1300352 (+) 1986 WP_282414136.1 relaxase/mobilization nuclease and DUF3363 domain-containing protein -
  QKA52_RS06100 (QKA52_06100) ceuB 1300644..1301588 (+) 945 WP_031228494.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  QKA52_RS06105 (QKA52_06105) - 1301585..1302535 (+) 951 WP_096306236.1 iron chelate uptake ABC transporter family permease subunit -
  QKA52_RS06110 (QKA52_06110) - 1302532..1303308 (+) 777 WP_096306235.1 ATP-binding cassette domain-containing protein -
  QKA52_RS06115 (QKA52_06115) - 1303305..1304312 (+) 1008 WP_282414137.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33591.61 Da        Isoelectric Point: 9.8141

>NTDB_id=760835 QKA52_RS06100 WP_031228494.1 1300644..1301588(+) (ceuB) [Pseudomonas aeruginosa strain 2021CK-01315]
MARARLFYLFGFLCIASLFVGVKQLSWGQAYTPSDDAWLTLTVSRIPRLAALILTGVGLSICGVILQQIVRNKFVEPATS
GGLDAAKLGILLSLVLAPGLGTMGKMLFALLFCFSASMLYVAIIRRIKFKNTVLVPVVGLMYGSVLSAVAEFYAYRHNIV
QSMQGWLLGDFSKIIQGNYEIIYLILPIVALTYLFAHRFTVMGMGEDAATSLGLSYSRTAALGLLLVAVTVSACVIAVGA
IPFVGLVIPNLVALRCGENLRRTLPIVALAGASLLLVCDIVGRLLIFPFEVPIGMTAGSLGGLLFLVLLLGKLK

Nucleotide


Download         Length: 945 bp        

>NTDB_id=760835 QKA52_RS06100 WP_031228494.1 1300644..1301588(+) (ceuB) [Pseudomonas aeruginosa strain 2021CK-01315]
GTGGCTCGTGCACGTCTTTTCTATTTGTTTGGATTCCTATGCATCGCGTCGCTATTCGTCGGTGTGAAGCAACTGTCGTG
GGGGCAGGCTTATACGCCGTCCGATGATGCTTGGCTAACACTGACAGTGAGTCGTATTCCACGCTTGGCAGCGCTCATTC
TGACCGGAGTGGGACTGTCTATTTGCGGTGTGATTCTGCAGCAGATCGTTCGGAACAAATTTGTAGAGCCTGCGACGTCT
GGTGGTTTGGACGCGGCGAAACTGGGAATTCTGCTCTCGCTGGTGTTGGCGCCAGGGCTGGGAACCATGGGCAAGATGCT
GTTCGCGCTCTTGTTCTGCTTCTCGGCGAGCATGCTCTACGTCGCAATCATCCGGCGCATAAAGTTCAAGAACACGGTAT
TGGTTCCCGTCGTGGGGTTGATGTACGGCAGCGTCCTGAGTGCCGTCGCGGAGTTCTATGCCTATCGCCACAATATTGTG
CAGAGCATGCAAGGCTGGCTATTGGGTGATTTCTCAAAGATCATCCAAGGAAACTACGAGATTATCTATTTAATCCTCCC
CATCGTTGCGCTCACCTACCTGTTCGCACATCGTTTCACTGTAATGGGGATGGGGGAAGACGCAGCAACCAGCTTGGGCT
TGAGCTATTCGCGGACTGCGGCATTGGGCTTGCTGCTGGTGGCCGTCACCGTCTCTGCCTGCGTCATTGCCGTCGGGGCC
ATTCCCTTCGTCGGTTTGGTAATCCCCAACCTGGTGGCGCTGCGCTGTGGAGAGAACCTACGCCGAACCCTGCCTATCGT
GGCTCTGGCGGGTGCGTCACTTCTGCTTGTGTGCGACATCGTTGGCCGTCTTCTGATCTTTCCGTTTGAAGTGCCGATCG
GCATGACGGCAGGCAGCCTGGGCGGCTTGCTGTTCCTTGTGCTCCTGCTGGGGAAACTCAAATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(11-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

46.512

95.86

0.446