Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OT488_RS16385 Genome accession   NZ_CP113168
Coordinates   3326942..3327538 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain TSNTC34-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3321942..3332538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OT488_RS16370 (OT488_16365) helD 3322150..3324204 (-) 2055 WP_009485779.1 DNA helicase IV -
  OT488_RS16375 (OT488_16370) - 3324329..3324775 (+) 447 WP_002898425.1 YccF domain-containing protein -
  OT488_RS16380 (OT488_16375) yccS 3324793..3326928 (+) 2136 WP_002898422.1 YccS family putative transporter -
  OT488_RS16385 (OT488_16380) sxy/tfoX 3326942..3327538 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  OT488_RS16390 (OT488_16385) sulA 3327887..3328396 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  OT488_RS16395 (OT488_16390) ompA 3328749..3329819 (+) 1071 WP_002898408.1 porin OmpA -
  OT488_RS16400 (OT488_16395) matP 3329951..3330403 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OT488_RS16405 (OT488_16400) - 3330589..3332346 (+) 1758 WP_256946392.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=760741 OT488_RS16385 WP_004179217.1 3326942..3327538(-) (sxy/tfoX) [Klebsiella pneumoniae strain TSNTC34-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=760741 OT488_RS16385 WP_004179217.1 3326942..3327538(-) (sxy/tfoX) [Klebsiella pneumoniae strain TSNTC34-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51