Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MKJ05_RS08650 Genome accession   NZ_CP113163
Coordinates   1781584..1782198 (-) Length   204 a.a.
NCBI ID   WP_199145704.1    Uniprot ID   -
Organism   Citrobacter braakii strain LBA3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776584..1787198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKJ05_RS08635 (MKJ05_08635) helD 1776808..1778862 (-) 2055 WP_267589068.1 DNA helicase IV -
  MKJ05_RS08640 (MKJ05_08640) - 1778988..1779434 (+) 447 WP_016152485.1 YccF domain-containing protein -
  MKJ05_RS08645 (MKJ05_08645) yccS 1779453..1781606 (+) 2154 WP_199145702.1 YccS family putative transporter -
  MKJ05_RS08650 (MKJ05_08650) sxy/tfoX 1781584..1782198 (-) 615 WP_199145704.1 TfoX/Sxy family DNA transformation protein Regulator
  MKJ05_RS08655 (MKJ05_08655) sulA 1782415..1782924 (+) 510 WP_114682370.1 SOS-induced cell division inhibitor SulA -
  MKJ05_RS08660 (MKJ05_08660) ompA 1783282..1784340 (+) 1059 WP_114682369.1 porin OmpA -
  MKJ05_RS08665 (MKJ05_08665) matP 1784436..1784888 (-) 453 WP_003831992.1 macrodomain Ter protein MatP -
  MKJ05_RS08670 (MKJ05_08670) - 1785074..1786834 (+) 1761 WP_267589069.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23237.55 Da        Isoelectric Point: 8.2422

>NTDB_id=760687 MKJ05_RS08650 WP_199145704.1 1781584..1782198(-) (sxy/tfoX) [Citrobacter braakii strain LBA3]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVENSPVWLTFIKRGRQVVLN
YYQVNDTLWHNQQQLVSLSRFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=760687 MKJ05_RS08650 WP_199145704.1 1781584..1782198(-) (sxy/tfoX) [Citrobacter braakii strain LBA3]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCGCT
GTTTGGCGGCTATAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAGCGGTGAGTTGTATCTGCGCGCCTGTG
AACAGAGCGCCCAGTACTGTGTAGAAAATTCTCCTGTTTGGCTAACATTTATCAAACGCGGACGTCAGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCATAACCAGCAGCAGTTAGTATCGCTATCACGATTTTCACTTGATGCCGCCGT
TAAGGAAAAACAGAGTCGATTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACTTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.657

98.529

0.676