Detailed information NTG0760638

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJ956_RS06855
• Genome accession: NZ_CP124665
• Coordinates: 1466312..1467316 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2021CK-01229
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1461312..1472316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJ956_RS06825 (QJ956_06825)	fghA	1461404..1462255 (+)	852	WP_031685470.1	S-formylglutathione hydrolase	-
QJ956_RS06830 (QJ956_06830)	ispF	1462326..1462799 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJ956_RS06835 (QJ956_06835)	truD	1462796..1463863 (+)	1068	WP_009313546.1	tRNA pseudouridine(13) synthase TruD	-
QJ956_RS06840 (QJ956_06840)	surE	1463851..1464600 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QJ956_RS06845 (QJ956_06845)	-	1464633..1465268 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QJ956_RS06850 (QJ956_06850)	-	1465314..1466207 (+)	894	WP_031685471.1	peptidoglycan DD-metalloendopeptidase family protein	-
QJ956_RS06855 (QJ956_06855)	rpoS	1466312..1467316 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QJ956_RS06860 (QJ956_06860)	fdxA	1467743..1468066 (-)	324	WP_003092272.1	ferredoxin FdxA	-
QJ956_RS06865 (QJ956_06865)	mutS	1468133..1470700 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
QJ956_RS06870 (QJ956_06870)	-	1470826..1471833 (-)	1008	WP_023092575.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=760638 QJ956_RS06855 WP_003113871.1 1466312..1467316(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01229]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=760638 QJ956_RS06855 WP_003113871.1 1466312..1467316(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01229]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653