Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | ORR04_RS11290 | Genome accession | NZ_CP113117 |
| Coordinates | 2235424..2236800 (+) | Length | 458 a.a. |
| NCBI ID | WP_024525645.1 | Uniprot ID | A0A1X0XL19 |
| Organism | Levilactobacillus brevis strain SMB091 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2229601..2276035 | 2235424..2236800 | within | 0 |
Gene organization within MGE regions
Location: 2229601..2276035
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORR04_RS11260 (ORR04_11260) | - | 2229601..2230833 (+) | 1233 | WP_047021152.1 | serine hydrolase domain-containing protein | - |
| ORR04_RS11265 (ORR04_11265) | - | 2230967..2232289 (-) | 1323 | WP_370349705.1 | C1 family peptidase | - |
| ORR04_RS11270 (ORR04_11270) | - | 2232786..2233561 (+) | 776 | Protein_2180 | IS5 family transposase | - |
| ORR04_RS11275 (ORR04_11275) | rpiA | 2233576..2234262 (-) | 687 | WP_011667345.1 | ribose-5-phosphate isomerase RpiA | - |
| ORR04_RS11280 (ORR04_11280) | - | 2234270..2234611 (-) | 342 | WP_042521562.1 | hypothetical protein | - |
| ORR04_RS11285 (ORR04_11285) | - | 2234790..2235329 (+) | 540 | WP_011667347.1 | dUTP diphosphatase | - |
| ORR04_RS11290 (ORR04_11290) | radA | 2235424..2236800 (+) | 1377 | WP_024525645.1 | DNA repair protein RadA | Machinery gene |
| ORR04_RS11295 (ORR04_11295) | - | 2236836..2238020 (+) | 1185 | WP_021741476.1 | PIN/TRAM domain-containing protein | - |
| ORR04_RS11300 (ORR04_11300) | gltX | 2238277..2239767 (+) | 1491 | WP_011667350.1 | glutamate--tRNA ligase | - |
| ORR04_RS11305 (ORR04_11305) | cysS | 2239922..2241334 (+) | 1413 | WP_011667351.1 | cysteine--tRNA ligase | - |
| ORR04_RS11310 (ORR04_11310) | - | 2241334..2241741 (+) | 408 | WP_011667352.1 | Mini-ribonuclease 3 | - |
| ORR04_RS11315 (ORR04_11315) | rlmB | 2241738..2242505 (+) | 768 | WP_011667353.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| ORR04_RS11320 (ORR04_11320) | - | 2242534..2243079 (+) | 546 | WP_015473395.1 | NYN domain-containing protein | - |
| ORR04_RS11325 (ORR04_11325) | - | 2243152..2243721 (+) | 570 | WP_011667354.1 | sigma-70 family RNA polymerase sigma factor | - |
| ORR04_RS11330 (ORR04_11330) | rpmG | 2243796..2243945 (+) | 150 | WP_011667355.1 | 50S ribosomal protein L33 | - |
| ORR04_RS11335 (ORR04_11335) | secE | 2243989..2244165 (+) | 177 | WP_011667356.1 | preprotein translocase subunit SecE | - |
| ORR04_RS11340 (ORR04_11340) | nusG | 2244290..2244838 (+) | 549 | WP_015473396.1 | transcription termination/antitermination protein NusG | - |
| ORR04_RS11345 (ORR04_11345) | rplK | 2245037..2245462 (+) | 426 | WP_011667358.1 | 50S ribosomal protein L11 | - |
| ORR04_RS11350 (ORR04_11350) | rplA | 2245560..2246258 (+) | 699 | WP_011667359.1 | 50S ribosomal protein L1 | - |
| ORR04_RS11355 (ORR04_11355) | rplJ | 2246481..2246987 (+) | 507 | WP_011667360.1 | 50S ribosomal protein L10 | - |
| ORR04_RS11360 (ORR04_11360) | rplL | 2247036..2247404 (+) | 369 | WP_011667361.1 | 50S ribosomal protein L7/L12 | - |
| ORR04_RS11365 (ORR04_11365) | - | 2247576..2248562 (+) | 987 | WP_267668420.1 | IS30 family transposase | - |
| ORR04_RS11370 (ORR04_11370) | mprF | 2248875..2251487 (+) | 2613 | WP_024855143.1 | bifunctional lysylphosphatidylglycerol flippase/synthetase MprF | - |
| ORR04_RS11375 (ORR04_11375) | - | 2251552..2252130 (-) | 579 | WP_114670279.1 | TIGR00730 family Rossman fold protein | - |
| ORR04_RS11380 (ORR04_11380) | - | 2252333..2252659 (+) | 327 | WP_267668421.1 | 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | - |
| ORR04_RS11385 (ORR04_11385) | - | 2252724..2253643 (+) | 920 | Protein_2203 | IS30-like element ISLsa1 family transposase | - |
| ORR04_RS11390 (ORR04_11390) | - | 2253681..2254283 (+) | 603 | WP_267668422.1 | 3-hydroxyacyl-CoA dehydrogenase family protein | - |
| ORR04_RS11395 (ORR04_11395) | nrdF | 2254394..2255389 (-) | 996 | WP_043022180.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| ORR04_RS11400 (ORR04_11400) | nrdE | 2255424..2257589 (-) | 2166 | WP_267668423.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| ORR04_RS11405 (ORR04_11405) | nrdH | 2257698..2257925 (-) | 228 | WP_043022178.1 | glutaredoxin-like protein NrdH | - |
| ORR04_RS11410 (ORR04_11410) | - | 2258129..2258740 (+) | 612 | WP_047021158.1 | class I SAM-dependent methyltransferase | - |
| ORR04_RS11415 (ORR04_11415) | tadA | 2258796..2259308 (+) | 513 | WP_042521648.1 | tRNA adenosine(34) deaminase TadA | - |
| ORR04_RS11425 (ORR04_11425) | dnaX | 2259585..2261315 (+) | 1731 | WP_251952486.1 | DNA polymerase III subunit gamma/tau | - |
| ORR04_RS11430 (ORR04_11430) | - | 2261334..2261654 (+) | 321 | WP_015473408.1 | YbaB/EbfC family nucleoid-associated protein | - |
| ORR04_RS11435 (ORR04_11435) | recR | 2261676..2262275 (+) | 600 | WP_015473409.1 | recombination mediator RecR | - |
| ORR04_RS11440 (ORR04_11440) | - | 2262293..2262544 (+) | 252 | WP_267668424.1 | YaaL family protein | - |
| ORR04_RS11445 (ORR04_11445) | tmk | 2262742..2263386 (+) | 645 | WP_024855140.1 | dTMP kinase | - |
| ORR04_RS11450 (ORR04_11450) | - | 2263413..2263742 (+) | 330 | WP_011667375.1 | cyclic-di-AMP receptor | - |
| ORR04_RS11455 (ORR04_11455) | holB | 2263752..2264765 (+) | 1014 | WP_267668425.1 | DNA polymerase III subunit delta' | - |
| ORR04_RS11460 (ORR04_11460) | - | 2264790..2265128 (+) | 339 | WP_024525629.1 | DNA replication initiation control protein YabA | - |
| ORR04_RS11465 (ORR04_11465) | rsmI | 2265140..2266021 (+) | 882 | WP_097558340.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| ORR04_RS11470 (ORR04_11470) | - | 2266027..2266767 (+) | 741 | WP_097547540.1 | acyl-[acyl-carrier-protein] thioesterase | - |
| ORR04_RS11475 (ORR04_11475) | tsaB | 2266946..2267668 (+) | 723 | WP_011667380.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| ORR04_RS11480 (ORR04_11480) | rimI | 2267652..2268260 (+) | 609 | WP_043022169.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| ORR04_RS11485 (ORR04_11485) | tsaD | 2268295..2269344 (+) | 1050 | WP_015473415.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| ORR04_RS11490 (ORR04_11490) | - | 2269425..2270603 (-) | 1179 | WP_043022168.1 | CynX/NimT family MFS transporter | - |
| ORR04_RS11495 (ORR04_11495) | - | 2270661..2270957 (-) | 297 | WP_011667384.1 | ArsR/SmtB family transcription factor | - |
| ORR04_RS11500 (ORR04_11500) | - | 2271066..2273018 (-) | 1953 | WP_267668426.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| ORR04_RS11505 (ORR04_11505) | - | 2273251..2273889 (+) | 639 | WP_011667386.1 | redox-sensing transcriptional repressor Rex | - |
| ORR04_RS11510 (ORR04_11510) | groES | 2274070..2274354 (+) | 285 | WP_011667387.1 | co-chaperone GroES | - |
| ORR04_RS11515 (ORR04_11515) | groL | 2274410..2276035 (+) | 1626 | WP_267668427.1 | chaperonin GroEL | - |
Sequence
Protein
Download Length: 458 a.a. Molecular weight: 49788.09 Da Isoelectric Point: 7.0881
>NTDB_id=760493 ORR04_RS11290 WP_024525645.1 2235424..2236800(+) (radA) [Levilactobacillus brevis strain SMB091]
MAKPRTTYVCQNCDYSSPRYLGRCPNCGEWNTMVEEVVTPAAAKPQSTRTTASGERSHPQLMSEIKHSTESRTKTQMEEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSQTGGKVLYVSGEESASQIKMRADRLVVNSDHLYLYPETDMASIR
ANIEQMKPDYVVIDSVQTMQAPGIESAIGSVSQIRAVTGELMQIAKTNGITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRAVKNRFGSTNELGIFEMREGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALITPSVF
GNAQRTSSGLDRNRVSLLMAVLEKRANLMLQNQDAFLKAAGGVKLDEPAIDLAIALSIASSYRDTATQPTDCFVGEVGLT
GEIRRVNRIEQRVAEAKKLGFKRIFIPKNNLQGWTPDPGIDVVGVSTLRQTLKLALDV
MAKPRTTYVCQNCDYSSPRYLGRCPNCGEWNTMVEEVVTPAAAKPQSTRTTASGERSHPQLMSEIKHSTESRTKTQMEEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSQTGGKVLYVSGEESASQIKMRADRLVVNSDHLYLYPETDMASIR
ANIEQMKPDYVVIDSVQTMQAPGIESAIGSVSQIRAVTGELMQIAKTNGITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRAVKNRFGSTNELGIFEMREGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALITPSVF
GNAQRTSSGLDRNRVSLLMAVLEKRANLMLQNQDAFLKAAGGVKLDEPAIDLAIALSIASSYRDTATQPTDCFVGEVGLT
GEIRRVNRIEQRVAEAKKLGFKRIFIPKNNLQGWTPDPGIDVVGVSTLRQTLKLALDV
Nucleotide
Download Length: 1377 bp
>NTDB_id=760493 ORR04_RS11290 WP_024525645.1 2235424..2236800(+) (radA) [Levilactobacillus brevis strain SMB091]
GTGGCGAAACCAAGAACAACGTATGTGTGTCAAAATTGTGATTATAGCTCACCCCGTTATTTGGGGCGTTGTCCCAATTG
TGGTGAGTGGAACACGATGGTGGAAGAAGTCGTCACACCGGCTGCCGCCAAGCCACAATCAACCCGGACCACTGCTTCTG
GAGAACGGTCACACCCCCAACTCATGAGTGAGATTAAACACTCAACGGAAAGCCGAACGAAGACGCAAATGGAAGAACTG
AACCGAGTGCTGGGTGGGGGGATTGTGCCGGGATCTTTGATCCTAATCGGTGGTGATCCTGGAATTGGAAAATCAACCCT
CTTGCTTCAAGTATCGGGGCAACTCAGCCAAACAGGCGGTAAAGTGTTGTATGTTTCTGGAGAAGAAAGTGCGTCACAGA
TTAAAATGCGGGCGGATCGGTTAGTCGTCAATAGCGACCACTTGTATCTTTATCCAGAAACTGATATGGCCAGTATTCGC
GCGAACATTGAACAGATGAAACCTGATTACGTGGTCATTGATTCCGTTCAGACCATGCAGGCGCCGGGAATCGAGTCGGC
GATTGGCTCGGTCTCACAAATTCGTGCGGTCACGGGTGAGCTGATGCAAATTGCCAAAACCAATGGCATCACTATTTTTG
TGGTGGGGCATGTGACGAAGGGCGGCGCAATTGCCGGTCCTAAGATTCTGGAACACATGGTGGATACGGTTCTTTACTTT
GAAGGTGACCTCCATCATACGTACCGAATTCTCCGAGCGGTCAAGAACCGATTCGGGTCAACGAATGAATTGGGTATCTT
TGAAATGCGTGAAGGTGGCTTGTATGAAGTTGCTAATCCGTCAGAAATTTTCTTGGAGGAACGATTGAAGGACGCAACCG
GTTCGGCCATTGTGGTATCAATGGAAGGTACGCGGCCAATTTTGGTAGAAGTTCAGGCGTTAATTACACCATCGGTCTTT
GGTAATGCGCAACGCACATCCAGCGGCCTGGATCGTAATCGGGTATCGTTGTTGATGGCTGTGCTAGAAAAACGGGCCAA
TCTAATGCTCCAAAATCAAGATGCATTCTTAAAGGCAGCAGGTGGCGTTAAGCTGGATGAACCGGCGATTGATTTAGCGA
TTGCACTGTCGATTGCCTCAAGTTATCGTGATACGGCCACGCAGCCAACGGATTGCTTTGTGGGTGAAGTTGGCCTGACT
GGTGAAATCCGTCGGGTTAATCGAATTGAACAACGGGTTGCGGAAGCAAAAAAGCTGGGCTTTAAGCGGATCTTCATTCC
CAAGAATAACCTTCAAGGGTGGACGCCAGATCCCGGAATTGATGTGGTCGGCGTGTCAACGTTACGACAGACGTTAAAAC
TGGCCTTGGACGTGTAA
GTGGCGAAACCAAGAACAACGTATGTGTGTCAAAATTGTGATTATAGCTCACCCCGTTATTTGGGGCGTTGTCCCAATTG
TGGTGAGTGGAACACGATGGTGGAAGAAGTCGTCACACCGGCTGCCGCCAAGCCACAATCAACCCGGACCACTGCTTCTG
GAGAACGGTCACACCCCCAACTCATGAGTGAGATTAAACACTCAACGGAAAGCCGAACGAAGACGCAAATGGAAGAACTG
AACCGAGTGCTGGGTGGGGGGATTGTGCCGGGATCTTTGATCCTAATCGGTGGTGATCCTGGAATTGGAAAATCAACCCT
CTTGCTTCAAGTATCGGGGCAACTCAGCCAAACAGGCGGTAAAGTGTTGTATGTTTCTGGAGAAGAAAGTGCGTCACAGA
TTAAAATGCGGGCGGATCGGTTAGTCGTCAATAGCGACCACTTGTATCTTTATCCAGAAACTGATATGGCCAGTATTCGC
GCGAACATTGAACAGATGAAACCTGATTACGTGGTCATTGATTCCGTTCAGACCATGCAGGCGCCGGGAATCGAGTCGGC
GATTGGCTCGGTCTCACAAATTCGTGCGGTCACGGGTGAGCTGATGCAAATTGCCAAAACCAATGGCATCACTATTTTTG
TGGTGGGGCATGTGACGAAGGGCGGCGCAATTGCCGGTCCTAAGATTCTGGAACACATGGTGGATACGGTTCTTTACTTT
GAAGGTGACCTCCATCATACGTACCGAATTCTCCGAGCGGTCAAGAACCGATTCGGGTCAACGAATGAATTGGGTATCTT
TGAAATGCGTGAAGGTGGCTTGTATGAAGTTGCTAATCCGTCAGAAATTTTCTTGGAGGAACGATTGAAGGACGCAACCG
GTTCGGCCATTGTGGTATCAATGGAAGGTACGCGGCCAATTTTGGTAGAAGTTCAGGCGTTAATTACACCATCGGTCTTT
GGTAATGCGCAACGCACATCCAGCGGCCTGGATCGTAATCGGGTATCGTTGTTGATGGCTGTGCTAGAAAAACGGGCCAA
TCTAATGCTCCAAAATCAAGATGCATTCTTAAAGGCAGCAGGTGGCGTTAAGCTGGATGAACCGGCGATTGATTTAGCGA
TTGCACTGTCGATTGCCTCAAGTTATCGTGATACGGCCACGCAGCCAACGGATTGCTTTGTGGGTGAAGTTGGCCTGACT
GGTGAAATCCGTCGGGTTAATCGAATTGAACAACGGGTTGCGGAAGCAAAAAAGCTGGGCTTTAAGCGGATCTTCATTCC
CAAGAATAACCTTCAAGGGTGGACGCCAGATCCCGGAATTGATGTGGTCGGCGTGTCAACGTTACGACAGACGTTAAAAC
TGGCCTTGGACGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis SK321 |
66.667 |
98.908 |
0.659 |
| radA | Streptococcus mitis NCTC 12261 |
66.446 |
98.908 |
0.657 |
| radA | Streptococcus pneumoniae Rx1 |
66.446 |
98.908 |
0.657 |
| radA | Streptococcus pneumoniae D39 |
66.446 |
98.908 |
0.657 |
| radA | Streptococcus pneumoniae R6 |
66.446 |
98.908 |
0.657 |
| radA | Streptococcus pneumoniae TIGR4 |
66.446 |
98.908 |
0.657 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
64.035 |
99.563 |
0.638 |