Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ORR04_RS03710 Genome accession   NZ_CP113117
Coordinates   691415..693187 (-) Length   590 a.a.
NCBI ID   WP_267668689.1    Uniprot ID   A0AB38X902
Organism   Levilactobacillus brevis strain SMB091     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 686415..698187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORR04_RS03685 (ORR04_03685) - 687018..687917 (-) 900 WP_267668568.1 RluA family pseudouridine synthase -
  ORR04_RS03690 (ORR04_03690) - 687914..688717 (-) 804 WP_021740943.1 NAD kinase -
  ORR04_RS03695 (ORR04_03695) - 688719..689378 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  ORR04_RS03700 (ORR04_03700) - 689692..690330 (+) 639 WP_011668199.1 ClpXP adapter SpxH family protein -
  ORR04_RS03705 (ORR04_03705) - 690493..691356 (+) 864 WP_011668200.1 DegV family protein -
  ORR04_RS03710 (ORR04_03710) pepF 691415..693187 (-) 1773 WP_267668689.1 oligoendopeptidase F Regulator
  ORR04_RS03715 (ORR04_03715) - 693287..694381 (-) 1095 WP_107696607.1 competence protein CoiA -
  ORR04_RS03720 (ORR04_03720) trmB 694508..695155 (-) 648 WP_015473913.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ORR04_RS03725 (ORR04_03725) - 695221..696012 (-) 792 WP_011668204.1 phosphotransferase family protein -
  ORR04_RS03730 (ORR04_03730) - 696074..697300 (-) 1227 WP_011668205.1 ABC transporter permease -
  ORR04_RS03735 (ORR04_03735) - 697297..698031 (-) 735 WP_267668569.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65894.80 Da        Isoelectric Point: 4.7691

>NTDB_id=760481 ORR04_RS03710 WP_267668689.1 691415..693187(-) (pepF) [Levilactobacillus brevis strain SMB091]
MALTWDLTTIFPDEAAFKTAIAAIKAQITVVAGLKGQLAQSGVALYRVTTAVFDLNRQLERVYVYASLNNDQDTGNAAAQ
ALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLAGASDIFGASAK
TYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVKTHNFSAETRHY
ASARAAAMSRNNVPAVVYDTLVETVNEHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQEAQEMALKALAV
LGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYTRTNQPYQYGDY
SIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLTADFMSDFYGKL
NQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSALPLDVMKQAGV
DMTQPGYLQTAFATFDERLAEFTQLAHELK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=760481 ORR04_RS03710 WP_267668689.1 691415..693187(-) (pepF) [Levilactobacillus brevis strain SMB091]
ATGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAAGCAGCTTTTAAGACCGCAATTGCCGCGATTAAAGCGCA
AATAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGGTCGCGTTATATCGTGTCACGACGGCGGTATTTG
ATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAACAATGATCAGGATACCGGCAATGCTGCGGCCCAA
GCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGCCACGGCTTGGTTTGAACCTGAGGTATTGGCCTT
GTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTGGCAGATTATCAGCATGTGTTTGACGTATTGGGCC
AGCAACGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCGGGGGCTAGTGATATCTTTGGTGCATCTGCTAAA
ACTTATAGTGTGCTGAGTGATGCTGATCTAAAGTTTCCGGTTGTTCAAGACGAGGCCGGCAACGATGTGCGACTGTCAGA
AGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGCAGCAGGCCTTTGAAGCATTATATTCGGTTTATC
AACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAAACGCATAATTTTAGCGCTGAGACGCGTCACTAT
GCGAGTGCCAGAGCGGCCGCAATGAGTCGCAACAATGTGCCAGCAGTGGTCTATGATACCTTGGTGGAAACAGTCAATGA
GCATTTAGACTCGCTGCATCGCTATGTTAATTTGCGCAAAGAGATTTTGGCCTTGCCGCAACTGCACATGTACGACCTGT
ATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAAGCACAAGAGATGGCGTTAAAGGCACTAGCAGTT
TTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCGGGCAATTGATGTGGTTGAAAATCAGGGTAAGCG
AACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTTTGTTGAATTGGCAAGATAGCTTGGAAAGCTTGT
TCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACTCGGACAAATCAACCGTACCAGTATGGTGATTAT
TCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCTGACGGACTATCTGTTGAAAACCCAGACTGACCC
CAAGGTGCGAGCTTACGTATTAAACCATTATCTGGATGGCTTTAAAGGCACGGTATACCGCCAGACGCAGTTTGCAGAAT
TTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACAGCTGACTTCATGAGTGATTTCTACGGCAAACTT
AATCAGCGTTATTACGGTGATGGCGTGATTTCCGATCCACAAATCGCTGATGAATGGACCCGAATTCCACATTTCTACTA
TGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCTACGACGTTATCGCAACGAATTTTGAGTGGCGACGAGG
CAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGAAGTTCTGCCTTACCACTTGATGTGATGAAACAAGCGGGCGTC
GATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGACGAGCGTTTGGCAGAATTCACGCAATTGGCGCA
TGAATTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(193-573)

Oligopeptidase F (Peptidase_M3_N)

(103-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.515

98.644

0.498