Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OTU47_RS09470 Genome accession   NZ_CP113115
Coordinates   1792825..1794627 (-) Length   600 a.a.
NCBI ID   WP_000244154.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1787825..1799627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS09435 (OTU47_09435) - 1787939..1788781 (+) 843 WP_000954117.1 DUF368 domain-containing protein -
  OTU47_RS09440 (OTU47_09440) - 1788781..1789263 (+) 483 WP_001085886.1 aminoacyl-tRNA deacylase -
  OTU47_RS09445 (OTU47_09445) - 1789263..1789883 (+) 621 WP_000780815.1 histidine phosphatase family protein -
  OTU47_RS09450 (OTU47_09450) - 1790136..1790231 (-) 96 Protein_1824 IS630 family transposase -
  OTU47_RS09455 (OTU47_09455) - 1790644..1790985 (+) 342 Protein_1825 transposase -
  OTU47_RS09460 (OTU47_09460) prsA 1791102..1792043 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  OTU47_RS09465 (OTU47_09465) - 1792110..1792823 (-) 714 WP_000230401.1 O-methyltransferase -
  OTU47_RS09470 (OTU47_09470) pepF 1792825..1794627 (-) 1803 WP_000244154.1 oligoendopeptidase F Regulator
  OTU47_RS09475 (OTU47_09475) coiA 1794646..1795599 (-) 954 WP_000495893.1 competence protein CoiA Machinery gene
  OTU47_RS09480 (OTU47_09480) tehB 1795672..1796532 (-) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  OTU47_RS09485 (OTU47_09485) smpB 1796548..1797015 (-) 468 WP_267750780.1 SsrA-binding protein SmpB -
  OTU47_RS09490 (OTU47_09490) rnr 1796978..1799332 (-) 2355 WP_050279170.1 ribonuclease R -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69908.91 Da        Isoelectric Point: 4.5907

>NTDB_id=760450 OTU47_RS09470 WP_000244154.1 1792825..1794627(-) (pepF) [Streptococcus pneumoniae strain NP2]
MVLQRNEINEKDTWDLSTIYPTDQAWEEALKDLTEQLETVVQYEGHLLDSADNLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEKQYADFLEAQPKLQVYQHYFDKLLQGKDHVLSQREKELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKKREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYQEALK
KAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=760450 OTU47_RS09470 WP_000244154.1 1792825..1794627(-) (pepF) [Streptococcus pneumoniae strain NP2]
ATGGTATTACAAAGAAATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATCTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATTTAACAGAACAATTGGAGACAGTAGTCCAGTATGAAGGCCATCTCTTGGATAGTGCGGATAACC
TACTAGAAATCACTGAATTTTCTCTTGAAATGGAACGCCAGATGGAGAAGCTTTACGTTTATGCTCATATGAAGAATGAC
CAGGATACACGTGAAGCTAAGTATCAAGAGTACTATGCCAAGGCCATGACACTCTACAGCCAGTTAGACCAAGCCTTTTC
ATTCTATGAGCCTGAATTTATGGAGATTAGCGAAAAGCAGTATGCTGACTTTTTAGAAGCTCAACCAAAGCTGCAGGTTT
ATCAACACTATTTTGACAAGCTCTTGCAAGGCAAGGATCACGTTCTTTCACAACGTGAAAAAGAATTATTGGCTGGAGCT
GGAGAAATCTTTGGTTCAGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTGTTCCCTTATGTACTAGACGA
TGATGGTAAAGAAGTTCAACTATCTCATGGGACTTACACACGTTTGATGGAGTCTAAAAAACGTGAGGTTCGCCGTGGTG
CCTATCAAGCTCTTTATGCGACTTACGAACAATTCCAACACACCTATGCCAAAACCTTGCAAACCAATGTTAAGGTGCAA
AATTACCGTGCTAAAGTTCGTAACTACAAGAGTGCTCGTCATGCAGCCCTCGCAGCGAATTTTGTTCCAGAAAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTACATCGCTATCTTGAGCTTCGTTCAAAAATCTTGGGGA
TTTCAGATCTCAAGATGTACGATGTCTACACACCGCTTTCATCTGTTGAATACAGTTTTACCTACCAAGAAGCCTTGAAA
AAAGCAGAAGATGCTTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTCAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAATCAAGGCAAGCGTTCAGGTGCCTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGACAATCTGGACAATCTCTTTACTCTTGTTCATGAAACAGGTCACAGTATGCATTCAAGCTATACTCGTGAAACT
CAGCCTTATGTTTACGGAGATTACTCTATCTTTTTGGCTGAGATTGCCTCAACTACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGACGACGCAACACGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAACACGCCATTCACCAAGCAGATCAAAATGGGGAGGTCTTGACAAGCGATTTC
CTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCTCGCATTCCACACTTCTACTATAACTACTATGTATATCAATATTCAACTGGCTTTGCGGCCGCCTCAGCCTTGGCTG
AAAAAATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTACCTCAAGGCAGGTAAGTCGGACTATCCACTT
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTACCTCAACGATGCCTTTGCAGTCTTTGAACGCCGTTT
AAATGAGTTTGAAGCCCTTGTTGAAAAATTAGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.282

99.333

0.668