Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDO07_RS08475 Genome accession   NZ_AP024937
Coordinates   1571551..1572018 (-) Length   155 a.a.
NCBI ID   WP_143586369.1    Uniprot ID   -
Organism   Thermus thermophilus strain AK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566551..1577018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO07_RS12030 (TthAK1_16630) - 1566843..1567364 (-) 522 WP_223965695.1 IS630 family transposase -
  LDO07_RS08455 (TthAK1_16640) - 1567385..1568107 (-) 723 Protein_1649 membrane dipeptidase -
  LDO07_RS08460 (TthAK1_16650) uvrC 1568122..1569903 (+) 1782 WP_223965689.1 excinuclease ABC subunit UvrC -
  LDO07_RS08465 (TthAK1_16660) - 1569954..1570877 (-) 924 WP_143586366.1 ribose-phosphate pyrophosphokinase -
  LDO07_RS08470 (TthAK1_16670) mtnN 1570892..1571554 (-) 663 WP_143586367.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  LDO07_RS08475 (TthAK1_16680) luxS 1571551..1572018 (-) 468 WP_143586369.1 S-ribosylhomocysteine lyase Regulator
  LDO07_RS08480 (TthAK1_16690) - 1572057..1572884 (+) 828 WP_143586371.1 KaiC domain-containing protein -
  LDO07_RS08485 (TthAK1_16700) - 1572929..1573540 (+) 612 WP_014510710.1 circadian clock protein KaiC -
  LDO07_RS08490 (TthAK1_16710) guaA 1573553..1575064 (+) 1512 WP_143586373.1 glutamine-hydrolyzing GMP synthase -
  LDO07_RS08495 (TthAK1_16720) - 1575064..1575627 (+) 564 WP_172619201.1 Uma2 family endonuclease -
  LDO07_RS08500 (TthAK1_16730) - 1575652..1575939 (+) 288 WP_143586377.1 glutamine synthetase/cystathionine beta-lyase binding protein -
  LDO07_RS08505 (TthAK1_16740) - 1575939..1576325 (+) 387 WP_223965690.1 VOC family protein -
  LDO07_RS08510 (TthAK1_16750) rnhA 1576322..1576822 (+) 501 WP_223965691.1 ribonuclease HI -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16809.31 Da        Isoelectric Point: 6.4901

>NTDB_id=76041 LDO07_RS08475 WP_143586369.1 1571551..1572018(-) (luxS) [Thermus thermophilus strain AK1]
MAEVESFSLDHTRVKAPYVRLAGRKALAGGVVEKYDLRLAQPNREALPTGALHTLEHLLAGYLRDHLPGVIDLSPMGCRT
GFYLVVEGPVGEEKVLEAFAQALKDVLAHEGEVPGASFKECGNYRDHDLPGAKAWAEKVLQAGLKVQATIPLEAR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=76041 LDO07_RS08475 WP_143586369.1 1571551..1572018(-) (luxS) [Thermus thermophilus strain AK1]
ATGGCCGAGGTGGAGAGCTTCAGCCTGGACCACACCAGGGTCAAGGCCCCCTACGTGCGCCTGGCGGGGAGGAAGGCCCT
CGCGGGGGGCGTGGTGGAGAAGTACGACCTGAGGCTTGCCCAGCCCAACCGGGAGGCCCTGCCCACGGGGGCCTTGCACA
CCCTGGAGCACCTCCTCGCAGGGTATTTGCGGGACCACCTCCCAGGGGTCATTGACCTCTCCCCCATGGGCTGCCGCACG
GGGTTTTACCTGGTGGTGGAGGGCCCCGTGGGGGAGGAAAAGGTCCTCGAGGCCTTCGCCCAGGCCTTGAAGGACGTCCT
CGCCCACGAGGGGGAGGTCCCCGGGGCGAGCTTCAAGGAGTGCGGCAACTACCGGGACCATGACCTTCCTGGCGCCAAGG
CCTGGGCGGAGAAGGTGCTGCAGGCGGGGCTTAAGGTCCAGGCCACCATTCCCCTGGAGGCGAGGTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.208

99.355

0.419

Multiple sequence alignment