Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H7R07_RS15215 Genome accession   NZ_AP021946
Coordinates   3089515..3090144 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WP2-S18-ESBL-08     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3084515..3095144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R07_RS15200 (WP2S18E08_29640) helD 3084757..3086811 (-) 2055 WP_001295354.1 DNA helicase IV -
  H7R07_RS15205 (WP2S18E08_29650) yccF 3086934..3087380 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H7R07_RS15210 (WP2S18E08_29660) yccS 3087390..3089552 (+) 2163 WP_000875058.1 YccS family putative transporter -
  H7R07_RS15215 (WP2S18E08_29670) sxy/tfoX 3089515..3090144 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H7R07_RS15220 (WP2S18E08_29680) sulA 3090363..3090872 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H7R07_RS15225 (WP2S18E08_29690) ompA 3091229..3092269 (+) 1041 WP_000750416.1 porin OmpA -
  H7R07_RS15230 (WP2S18E08_29700) matP 3092345..3092797 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H7R07_RS15235 (WP2S18E08_29710) ycbZ 3092983..3094743 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=76038 H7R07_RS15215 WP_000839153.1 3089515..3090144(-) (sxy/tfoX) [Escherichia coli strain WP2-S18-ESBL-08]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=76038 H7R07_RS15215 WP_000839153.1 3089515..3090144(-) (sxy/tfoX) [Escherichia coli strain WP2-S18-ESBL-08]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment