Detailed information NTG0760343

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I91_RS07280
• Genome accession: NZ_CP124662
• Coordinates: 1576781..1577785 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2021CK-01633
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1571781..1582785

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I91_RS07250 (P7I91_07250)	fghA	1571873..1572724 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
P7I91_RS07255 (P7I91_07255)	ispF	1572795..1573268 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I91_RS07260 (P7I91_07260)	truD	1573265..1574332 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
P7I91_RS07265 (P7I91_07265)	surE	1574320..1575069 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I91_RS07270 (P7I91_07270)	-	1575102..1575737 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I91_RS07275 (P7I91_07275)	-	1575783..1576676 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I91_RS07280 (P7I91_07280)	rpoS	1576781..1577785 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I91_RS07285 (P7I91_07285)	fdxA	1578212..1578535 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P7I91_RS07290 (P7I91_07290)	mutS	1578602..1581169 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I91_RS07295 (P7I91_07295)	-	1581295..1582302 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=760343 P7I91_RS07280 WP_003113871.1 1576781..1577785(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01633]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=760343 P7I91_RS07280 WP_003113871.1 1576781..1577785(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01633]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653