Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OVY33_RS07585 Genome accession   NZ_CP113107
Coordinates   1557081..1558445 (+) Length   454 a.a.
NCBI ID   WP_103358652.1    Uniprot ID   A0A2K3YK01
Organism   Staphylococcus rostri strain PJFA-333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1552081..1563445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVY33_RS07565 - 1552454..1552915 (+) 462 WP_103358648.1 CtsR family transcriptional regulator -
  OVY33_RS07570 - 1552936..1553472 (+) 537 WP_103358649.1 UvrB/UvrC motif-containing protein -
  OVY33_RS07575 - 1553462..1554466 (+) 1005 WP_103358650.1 protein arginine kinase -
  OVY33_RS07580 - 1554482..1556929 (+) 2448 WP_103358651.1 ATP-dependent Clp protease ATP-binding subunit -
  OVY33_RS07585 radA 1557081..1558445 (+) 1365 WP_103358652.1 DNA repair protein RadA Machinery gene
  OVY33_RS07590 ispD 1558542..1559240 (+) 699 WP_103358653.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OVY33_RS07595 ispF 1559233..1559715 (+) 483 WP_103358654.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OVY33_RS07600 gltX 1559982..1561436 (+) 1455 WP_103358655.1 glutamate--tRNA ligase -
  OVY33_RS07605 cysE 1561749..1562390 (+) 642 WP_103358656.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49763.30 Da        Isoelectric Point: 7.2147

>NTDB_id=760298 OVY33_RS07585 WP_103358652.1 1557081..1558445(+) (radA) [Staphylococcus rostri strain PJFA-333]
MAKKKVTFECTACGYQTPKWMGKCPNCGAWNSMEETIEQKAASPKHGVRAESTAKVQKLNDVKQEQAPRILTNSRELNRV
LGGGIVQGSLVLIGGDPGIGKSTLLLQMCASLSKERKILYITGEESLNQTKLRADRLEEDASALNVFAETNLEIIHEAVK
KVEPELIVVDSIQTIFHPDITSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLQSVVNPSEMFLEERSSNVPGSTIVATMEGSRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLTEPAVDLGIIIATATSFKDRAVDGLDCFIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIEVIGVTSVHEALKYALKA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=760298 OVY33_RS07585 WP_103358652.1 1557081..1558445(+) (radA) [Staphylococcus rostri strain PJFA-333]
ATGGCGAAAAAGAAAGTGACGTTTGAATGTACCGCGTGTGGATATCAGACGCCGAAATGGATGGGGAAATGTCCGAACTG
TGGGGCATGGAACAGTATGGAAGAAACGATTGAACAAAAGGCAGCAAGTCCAAAACATGGTGTGCGTGCTGAGTCGACTG
CGAAGGTGCAAAAGTTGAATGATGTAAAACAAGAACAAGCACCGCGTATTTTGACGAATAGTCGTGAGTTAAACCGCGTG
TTAGGTGGCGGTATTGTGCAAGGTTCACTCGTGCTGATTGGTGGCGACCCGGGTATTGGGAAGTCGACATTGCTGTTACA
AATGTGTGCGTCATTATCGAAAGAACGCAAAATTTTATATATTACGGGTGAGGAATCGCTTAACCAAACGAAGCTGCGTG
CGGATCGCTTGGAAGAAGATGCGAGCGCATTAAATGTATTTGCAGAAACGAACTTGGAAATCATTCACGAAGCGGTGAAG
AAGGTAGAGCCGGAACTTATTGTTGTTGACTCGATTCAGACGATTTTCCATCCGGATATTACGTCTGCACCAGGTTCTGT
CTCACAAGTGCGTGAAAGTACACAGAGTTTGATGCATATTGCCAAGCAGATGAACATTGCGACGTTTATCGTTGGTCATG
TGACGAAAGAAGGTCAAATTGCGGGACCACGTTTGTTAGAACATATGGTGGATACGGTGCTGTACTTTGAAGGTGATGAA
CACCACGCCTATCGTATTTTGCGTGCGGTAAAAAACCGTTTTGGTTCAACAAATGAAATGGGTATTTTTGAAATGAAACA
GTCTGGCTTACAAAGTGTTGTGAACCCGTCAGAGATGTTTTTGGAAGAACGTTCGTCTAACGTACCAGGTTCGACGATTG
TGGCGACAATGGAAGGGTCGCGCCCATTACTTATAGAAGTTCAAGCGCTCGTAACACCAACGACGTTTAACAATCCGCGA
CGTATGGCGACAGGAATTGATCATAATCGTTTAAGTTTGTTGATGGCGGTACTGGAGAAGAAGGAAGGATACTTGCTGCA
ACAACAAGATGCATATATTAAAGTAGCCGGCGGTGTGAAATTAACAGAGCCAGCGGTAGACTTAGGTATTATCATTGCGA
CTGCGACAAGTTTCAAAGACCGTGCCGTAGATGGTTTGGACTGCTTTATCGGTGAAGTTGGTTTAACAGGAGAAGTGCGT
CGTGTCTCACGTATTGAACAGCGTGTACAAGAAGCGGCAAAGTTAGGCTTTAAGCGTGCGATTATTCCGCAAACGAATAT
CGGTGGTTGGACGTTCCCAGAAGGTATTGAAGTAATTGGTGTGACGTCCGTACATGAAGCGTTAAAATACGCATTGAAGG
CATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-218)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3YK01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.661
  radA Streptococcus pneumoniae Rx1

58.352

98.899

0.577
  radA Streptococcus pneumoniae D39

58.352

98.899

0.577
  radA Streptococcus pneumoniae R6

58.352

98.899

0.577
  radA Streptococcus pneumoniae TIGR4

58.352

98.899

0.577
  radA Streptococcus mitis NCTC 12261

58.352

98.899

0.577
  radA Streptococcus mitis SK321

58.352

98.899

0.577