Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OVY33_RS05405 Genome accession   NZ_CP113107
Coordinates   1085104..1086072 (-) Length   322 a.a.
NCBI ID   WP_103357106.1    Uniprot ID   A0A2K3YXL1
Organism   Staphylococcus rostri strain PJFA-333     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1080104..1091072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVY33_RS05380 - 1080661..1081122 (+) 462 WP_309306761.1 MarR family transcriptional regulator -
  OVY33_RS05385 - 1081179..1082057 (-) 879 WP_103357110.1 hypothetical protein -
  OVY33_RS05390 - 1082297..1083337 (-) 1041 WP_309306762.1 siderophore ABC transporter substrate-binding protein -
  OVY33_RS05395 - 1083337..1084158 (-) 822 WP_103357108.1 ABC transporter ATP-binding protein -
  OVY33_RS05400 - 1084155..1085051 (-) 897 WP_373694269.1 iron chelate uptake ABC transporter family permease subunit -
  OVY33_RS05405 ceuB 1085104..1086072 (-) 969 WP_103357106.1 ABC transporter permease Machinery gene
  OVY33_RS05410 - 1086516..1086683 (-) 168 WP_169926443.1 hypothetical protein -
  OVY33_RS05415 - 1086837..1087523 (-) 687 WP_103357105.1 LrgB family protein -
  OVY33_RS05420 - 1087520..1087912 (-) 393 WP_103357104.1 CidA/LrgA family protein -
  OVY33_RS05425 - 1088006..1088917 (-) 912 WP_103357103.1 LysR family transcriptional regulator -
  OVY33_RS05430 - 1089009..1089380 (+) 372 WP_103357102.1 DUF488 domain-containing protein -
  OVY33_RS05435 - 1089476..1089898 (-) 423 WP_103357101.1 universal stress protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35486.72 Da        Isoelectric Point: 10.0160

>NTDB_id=760287 OVY33_RS05405 WP_103357106.1 1085104..1086072(-) (ceuB) [Staphylococcus rostri strain PJFA-333]
MRYLMNGYVLFAILCVLTVCSLFIGVSSVPIHAIFSLDEHQLNILFASRIPRTVSILISGSTLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILISLLFFPSQHILVKLAFAVVCSLAGTFLFVQMIQRIKFKDVIFVPLIGIMLGGIISSFSTFLALR
TNAVQSIGNWLNGNFAIITSGRYEILYLSVPLLILTYIFANQFTIAGMGRDFSKNLGLNYELIMNIGLFITATITALVVV
TVGTLPFLGLIVPNIVSIFRGDHLKHALPHTALLGAIFVMFSDILGRVIVYPYEINIGLTIGVFGTLIFIVMLVRGRRHY
VQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=760287 OVY33_RS05405 WP_103357106.1 1085104..1086072(-) (ceuB) [Staphylococcus rostri strain PJFA-333]
ATGCGTTATTTAATGAATGGCTATGTGTTGTTTGCAATACTCTGTGTTCTGACTGTGTGTTCTTTGTTTATTGGTGTAAG
TAGCGTGCCAATTCACGCAATCTTTTCACTTGATGAACATCAACTCAATATTTTGTTCGCAAGTCGTATACCACGAACGG
TCAGCATTTTAATATCAGGAAGTACGTTAGCGCTCGCAGGTTTGATTATGCAACAAATGATGCAGAACAAATTTGTGAGT
CCTACAACAGCTGGAACGATGGAATGGGCGAAACTTGGCATCTTAATCTCATTGCTCTTTTTCCCGTCTCAGCACATCCT
TGTTAAGCTTGCGTTTGCAGTGGTATGCAGCCTCGCAGGAACATTCCTCTTTGTTCAAATGATTCAACGTATTAAGTTCA
AAGACGTCATCTTCGTACCTTTAATCGGGATCATGTTGGGCGGTATTATTTCTAGTTTCTCAACATTTCTTGCTTTGCGT
ACGAACGCCGTCCAAAGTATTGGTAACTGGTTGAATGGTAACTTTGCCATTATCACGAGTGGTCGTTATGAGATTTTATA
TCTAAGCGTACCGCTACTGATTCTTACATATATTTTTGCCAATCAGTTTACTATTGCAGGCATGGGTCGTGACTTTAGTA
AGAACTTAGGTTTGAACTATGAACTCATTATGAACATTGGCTTGTTTATTACCGCAACGATTACAGCATTGGTTGTTGTG
ACAGTTGGTACATTACCGTTTTTAGGTTTAATTGTGCCGAACATCGTATCCATCTTTCGAGGTGATCACTTAAAACATGC
ATTACCGCATACTGCATTACTAGGTGCGATATTCGTCATGTTCTCAGACATCTTAGGTCGTGTCATTGTATATCCATACG
AGATTAATATCGGCTTAACGATTGGTGTGTTTGGCACACTTATCTTTATCGTCATGTTAGTAAGGGGGCGACGTCATTAT
GTCCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3YXL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.589

99.068

0.481