Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   OVY33_RS03300 Genome accession   NZ_CP113107
Coordinates   658697..659413 (+) Length   238 a.a.
NCBI ID   WP_103358050.1    Uniprot ID   A0A2K3YQB9
Organism   Staphylococcus rostri strain PJFA-333     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 653697..664413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVY33_RS03280 - 654940..655737 (+) 798 WP_309306699.1 carbon-nitrogen family hydrolase -
  OVY33_RS11725 - 656198..656275 (-) 78 WP_142381183.1 delta-lysin family phenol-soluble modulin -
  OVY33_RS03285 - 656647..657213 (+) 567 WP_103358052.1 accessory gene regulator AgrB -
  OVY33_RS03290 agrD 657213..657353 (+) 141 WP_240624127.1 cyclic lactone autoinducer peptide AgrD -
  OVY33_RS03295 agrC 657386..658684 (+) 1299 WP_103358051.1 quorum-sensing sensor histidine kinase AgrC -
  OVY33_RS03300 agrA 658697..659413 (+) 717 WP_103358050.1 quorum-sensing response regulator AgrA Regulator
  OVY33_RS03305 - 659471..660415 (-) 945 WP_309306700.1 carbohydrate kinase -
  OVY33_RS03310 - 660408..661901 (-) 1494 WP_103358048.1 sucrose-6-phosphate hydrolase -
  OVY33_RS03315 - 661919..662908 (-) 990 WP_103358047.1 LacI family DNA-binding transcriptional regulator -
  OVY33_RS03320 - 663180..663335 (-) 156 WP_169926471.1 hypothetical protein -
  OVY33_RS03325 - 663450..663674 (-) 225 WP_103358046.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.90 Da        Isoelectric Point: 5.8230

>NTDB_id=760284 OVY33_RS03300 WP_103358050.1 658697..659413(+) (agrA) [Staphylococcus rostri strain PJFA-333]
MKILICEDDPKQRARMEDIINNYIMIEEKPMEIELSTDNPYELIEASKNLSDVGCYFLDIQLESDINGIKVGSEIRKHDP
IGNIIYVTSHSELTYLTFVYKVAAMDFIFKDDPDQLRMRVVECLETAMNRLNLLMKDNTVETLELKRGSGSEYVHYDEVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQVDHRFFRCHNSYVLNRHNIANVDPKARVVHFKNGELCYVSVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=760284 OVY33_RS03300 WP_103358050.1 658697..659413(+) (agrA) [Staphylococcus rostri strain PJFA-333]
TTGAAAATATTAATTTGTGAAGATGATCCAAAACAACGTGCACGTATGGAGGATATCATCAATAATTATATTATGATTGA
AGAAAAACCGATGGAAATTGAACTTTCGACGGATAATCCTTATGAGCTCATAGAAGCTTCTAAAAATTTGTCTGACGTCG
GCTGTTACTTTTTGGATATTCAACTAGAATCTGATATCAACGGTATTAAAGTCGGGAGTGAAATCCGCAAACACGACCCT
ATCGGTAATATTATTTACGTGACGAGTCATAGCGAATTAACGTACCTGACATTTGTATACAAAGTTGCGGCGATGGATTT
TATTTTTAAAGACGACCCTGACCAACTGCGTATGCGTGTAGTTGAATGTTTAGAAACAGCGATGAATCGTCTCAACTTGT
TGATGAAGGATAATACGGTGGAAACATTAGAGTTAAAGCGTGGTAGTGGTTCTGAGTATGTGCATTATGATGAAGTGATG
TTTTTTGAATCGTCACCAAAGTCTCATCGCTTAATTGCACATTTAGATAATCGACAAATTGAGTTTTATGGTAATTTGAA
GGAACTTGCTCAGGTGGATCACCGCTTCTTCCGTTGCCATAACAGTTATGTGTTGAATCGTCATAACATTGCCAATGTCG
ATCCAAAAGCACGTGTTGTGCACTTTAAAAATGGCGAACTGTGCTATGTATCGGTGCGCAATATTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(153-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3YQB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

77.311

100

0.773