Detailed information NTG0760241

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I96_RS07875
• Genome accession: NZ_CP124660
• Coordinates: 1673465..1674469 (+)
• Length: 334 a.a.
• NCBI ID: WP_023085982.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 2022CK-00160
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1668465..1679469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I96_RS07845 (P7I96_07845)	fghA	1668557..1669408 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
P7I96_RS07850 (P7I96_07850)	ispF	1669479..1669952 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I96_RS07855 (P7I96_07855)	truD	1669949..1671016 (+)	1068	WP_023085981.1	tRNA pseudouridine(13) synthase TruD	-
P7I96_RS07860 (P7I96_07860)	surE	1671004..1671753 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I96_RS07865 (P7I96_07865)	-	1671786..1672421 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I96_RS07870 (P7I96_07870)	-	1672467..1673360 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I96_RS07875 (P7I96_07875)	rpoS	1673465..1674469 (+)	1005	WP_023085982.1	RNA polymerase sigma factor RpoS	Regulator
P7I96_RS07880 (P7I96_07880)	fdxA	1674896..1675219 (-)	324	WP_003119354.1	ferredoxin FdxA	-
P7I96_RS07885 (P7I96_07885)	mutS	1675286..1677853 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
P7I96_RS07890 (P7I96_07890)	-	1677979..1678986 (-)	1008	WP_023085983.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38263.40 Da
• Isoelectric Point: 5.0478

>NTDB_id=760241 P7I96_RS07875 WP_023085982.1 1673465..1674469(+) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00160]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRRRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=760241 P7I96_RS07875 WP_023085982.1 1673465..1674469(+) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00160]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAGGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.159	98.204	0.65