Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   P7I93_RS09285 Genome accession   NZ_CP124658
Coordinates   1975684..1976013 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain 2022CK-00068     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1970684..1981013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I93_RS09270 (P7I93_09270) - 1971384..1972343 (+) 960 WP_023091541.1 SDR family oxidoreductase -
  P7I93_RS09275 (P7I93_09275) - 1972340..1973365 (+) 1026 WP_009313766.1 glycosyltransferase family 4 protein -
  P7I93_RS09280 (P7I93_09280) - 1973496..1975493 (+) 1998 WP_023091542.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  P7I93_RS09285 (P7I93_09285) comEA/comE1 1975684..1976013 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  P7I93_RS09295 (P7I93_09295) - 1976230..1977426 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  P7I93_RS09300 (P7I93_09300) uvrB 1977614..1979626 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=760143 P7I93_RS09285 WP_003138486.1 1975684..1976013(+) (comEA/comE1) [Pseudomonas aeruginosa strain 2022CK-00068]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=760143 P7I93_RS09285 WP_003138486.1 1975684..1976013(+) (comEA/comE1) [Pseudomonas aeruginosa strain 2022CK-00068]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385