Detailed information NTG0760138

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I93_RS06845
• Genome accession: NZ_CP124658
• Coordinates: 1454815..1455819 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2022CK-00068
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1449815..1460819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I93_RS06815 (P7I93_06815)	fghA	1449907..1450758 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
P7I93_RS06820 (P7I93_06820)	ispF	1450829..1451302 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I93_RS06825 (P7I93_06825)	truD	1451299..1452366 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
P7I93_RS06830 (P7I93_06830)	surE	1452354..1453103 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I93_RS06835 (P7I93_06835)	-	1453136..1453771 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I93_RS06840 (P7I93_06840)	-	1453817..1454710 (+)	894	WP_023092574.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I93_RS06845 (P7I93_06845)	rpoS	1454815..1455819 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I93_RS06850 (P7I93_06850)	fdxA	1456246..1456569 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P7I93_RS06855 (P7I93_06855)	mutS	1456636..1459203 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I93_RS06860 (P7I93_06860)	-	1459329..1460336 (-)	1008	WP_023092575.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=760138 P7I93_RS06845 WP_003113871.1 1454815..1455819(+) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00068]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=760138 P7I93_RS06845 WP_003113871.1 1454815..1455819(+) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00068]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCTTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653