Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N7U66_RS07225 Genome accession   NZ_CP113088
Coordinates   1300771..1300890 (-) Length   39 a.a.
NCBI ID   WP_267677908.1    Uniprot ID   A0A9E8MZW7
Organism   Lacinutrix neustonica strain HL-RS19     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1295771..1305890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7U66_RS07200 (N7U66_07200) - 1295932..1297314 (-) 1383 Protein_1478 alpha-amylase -
  N7U66_RS07205 (N7U66_07205) - 1297535..1298239 (-) 705 WP_267677904.1 hypothetical protein -
  N7U66_RS07210 (N7U66_07210) - 1298507..1298956 (-) 450 WP_267677905.1 carboxypeptidase-like regulatory domain-containing protein -
  N7U66_RS07215 (N7U66_07215) - 1299338..1300510 (-) 1173 WP_267677906.1 acyl-CoA dehydrogenase family protein -
  N7U66_RS07220 (N7U66_07220) - 1300533..1300691 (-) 159 WP_267677907.1 helix-hairpin-helix domain-containing protein -
  N7U66_RS07225 (N7U66_07225) comEA 1300771..1300890 (-) 120 WP_267677908.1 helix-hairpin-helix domain-containing protein Machinery gene
  N7U66_RS07230 (N7U66_07230) - 1300991..1301410 (-) 420 WP_267677909.1 hypothetical protein -
  N7U66_RS07235 (N7U66_07235) - 1301423..1303141 (-) 1719 Protein_1485 alanine/glycine:cation symporter family protein -
  N7U66_RS07240 (N7U66_07240) - 1303238..1304263 (-) 1026 WP_267677911.1 TrkA family potassium uptake protein -
  N7U66_RS07245 (N7U66_07245) - 1304271..1304498 (-) 228 WP_267677912.1 PspC domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4478.11 Da        Isoelectric Point: 6.4478

>NTDB_id=760113 N7U66_RS07225 WP_267677908.1 1300771..1300890(-) (comEA) [Lacinutrix neustonica strain HL-RS19]
MYGIGEKLSERILNYRTLHHGFISLVELGEVYGLSPRND

Nucleotide


Download         Length: 120 bp        

>NTDB_id=760113 N7U66_RS07225 WP_267677908.1 1300771..1300890(-) (comEA) [Lacinutrix neustonica strain HL-RS19]
GTGTATGGTATAGGAGAGAAGCTTTCAGAGCGAATTTTAAACTACAGAACACTACACCATGGGTTCATCTCACTTGTCGA
GTTAGGGGAAGTGTACGGCCTGTCTCCGAGAAACGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(2-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

54.286

89.744

0.487
  comEA Legionella pneumophila strain ERS1305867

54.286

89.744

0.487