Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OSE17_RS01000 Genome accession   NZ_CP113085
Coordinates   232713..234095 (-) Length   460 a.a.
NCBI ID   WP_061703611.1    Uniprot ID   -
Organism   Pantoea agglomerans strain AB378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 227713..239095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSE17_RS00975 (OSE17_00975) - 228488..228652 (+) 165 WP_109652447.1 YhfG family protein -
  OSE17_RS00980 (OSE17_00980) - 228665..229267 (+) 603 WP_167430694.1 putative adenosine monophosphate-protein transferase Fic -
  OSE17_RS00985 (OSE17_00985) - 229248..230144 (-) 897 WP_191913901.1 LysR family transcriptional regulator -
  OSE17_RS00990 (OSE17_00990) - 230349..231350 (+) 1002 WP_122459303.1 zinc-binding alcohol dehydrogenase family protein -
  OSE17_RS00995 (OSE17_00995) nadR 231396..232637 (-) 1242 WP_010253612.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  OSE17_RS01000 (OSE17_01000) radA 232713..234095 (-) 1383 WP_061703611.1 DNA repair protein RadA Machinery gene
  OSE17_RS01005 (OSE17_01005) serB 234109..235086 (-) 978 WP_010253608.1 phosphoserine phosphatase -
  OSE17_RS01010 (OSE17_01010) - 235194..235844 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  OSE17_RS01015 (OSE17_01015) yjjG 236511..237191 (-) 681 WP_172608948.1 pyrimidine 5'-nucleotidase -
  OSE17_RS01020 (OSE17_01020) rimI 237210..237650 (-) 441 WP_010671713.1 ribosomal protein S18-alanine N-acetyltransferase -
  OSE17_RS01025 (OSE17_01025) - 237622..238032 (-) 411 WP_022625367.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49303.93 Da        Isoelectric Point: 7.4220

>NTDB_id=760090 OSE17_RS01000 WP_061703611.1 232713..234095(-) (radA) [Pantoea agglomerans strain AB378]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSIVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=760090 OSE17_RS01000 WP_061703611.1 232713..234095(-) (radA) [Pantoea agglomerans strain AB378]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGCT
ATGCCGGCAGCGCCGGAACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCTACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCTACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTAATGCACATGGCGGAGAT
CCAGTCCTCGCCCGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTCGGTCACGTCACCAAAGATGGCTCCCTGGCCGGACCGAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTTAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCCATGATGGGCAATCCACGCCGCGTGGCAGTGGGTCTGGAGCAGAACCGCCTGGCGATTCTGCTGGCGGTGCTGCACCG
GCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTTAACGTGGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCTATAGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATAGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.487
  radA Streptococcus mitis NCTC 12261

45.045

96.522

0.435
  radA Streptococcus pneumoniae Rx1

45.476

93.696

0.426
  radA Streptococcus pneumoniae D39

45.476

93.696

0.426
  radA Streptococcus pneumoniae R6

45.476

93.696

0.426
  radA Streptococcus pneumoniae TIGR4

45.476

93.696

0.426
  radA Streptococcus mitis SK321

45.476

93.696

0.426