Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OSV62_RS01590 Genome accession   NZ_CP113080
Coordinates   339193..340011 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB5075-T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334193..345011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV62_RS01555 (OSV62_01555) - 334775..334905 (-) 131 Protein_297 hypothetical protein -
  OSV62_RS01560 (OSV62_01560) rpoZ 334944..335222 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSV62_RS01565 (OSV62_01565) gmk 335295..335924 (-) 630 WP_000015937.1 guanylate kinase -
  OSV62_RS01570 (OSV62_01570) ispH 336047..336997 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSV62_RS01575 (OSV62_01575) fimU 337167..337640 (+) 474 WP_001214060.1 pilus assembly FimT family protein Machinery gene
  OSV62_RS01580 (OSV62_01580) pilV 337634..338194 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSV62_RS01585 (OSV62_01585) pilW 338195..339196 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSV62_RS01590 (OSV62_01590) pilX 339193..340011 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSV62_RS01595 (OSV62_01595) pilY1 340023..343877 (+) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  OSV62_RS01600 (OSV62_01600) pilY2 343888..344370 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  OSV62_RS01605 (OSV62_01605) pilE 344367..344792 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=760045 OSV62_RS01590 WP_000149374.1 339193..340011(+) (pilX) [Acinetobacter baumannii strain AB5075-T]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=760045 OSV62_RS01590 WP_000149374.1 339193..340011(+) (pilX) [Acinetobacter baumannii strain AB5075-T]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993