Detailed information NTG0760035

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I94_RS07385
• Genome accession: NZ_CP124657
• Coordinates: 1514451..1515455 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2022CK-00069
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1509451..1520455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I94_RS07355 (P7I94_07355)	fghA	1509543..1510394 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
P7I94_RS07360 (P7I94_07360)	ispF	1510465..1510938 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I94_RS07365 (P7I94_07365)	truD	1510935..1512002 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
P7I94_RS07370 (P7I94_07370)	surE	1511990..1512739 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I94_RS07375 (P7I94_07375)	-	1512772..1513407 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I94_RS07380 (P7I94_07380)	-	1513453..1514346 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I94_RS07385 (P7I94_07385)	rpoS	1514451..1515455 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I94_RS07390 (P7I94_07390)	fdxA	1515882..1516205 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P7I94_RS07395 (P7I94_07395)	mutS	1516272..1518839 (-)	2568	WP_282414934.1	DNA mismatch repair protein MutS	-
P7I94_RS07400 (P7I94_07400)	-	1518965..1519972 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=760035 P7I94_RS07385 WP_003113871.1 1514451..1515455(+) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00069]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=760035 P7I94_RS07385 WP_003113871.1 1514451..1515455(+) (rpoS) [Pseudomonas aeruginosa strain 2022CK-00069]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653