Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OSV60_RS02065 Genome accession   NZ_CP113077
Coordinates   436890..437525 (-) Length   211 a.a.
NCBI ID   WP_000472271.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 86II/2C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431890..442525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV60_RS02030 (OSV60_02030) mlaE 432226..433002 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  OSV60_RS02035 (OSV60_02035) - 433002..433682 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OSV60_RS02040 (OSV60_02040) - 433709..434350 (+) 642 WP_001093907.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  OSV60_RS02045 (OSV60_02045) - 434362..434649 (+) 288 WP_000250997.1 STAS domain-containing protein -
  OSV60_RS02050 (OSV60_02050) - 434719..435732 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  OSV60_RS02055 (OSV60_02055) - 435890..436471 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  OSV60_RS02060 (OSV60_02060) - 436486..436887 (+) 402 WP_000849701.1 NUDIX hydrolase -
  OSV60_RS02065 (OSV60_02065) comF 436890..437525 (-) 636 WP_000472271.1 ComF family protein Machinery gene
  OSV60_RS02070 (OSV60_02070) recG 437518..439563 (-) 2046 WP_065718994.1 ATP-dependent DNA helicase RecG -
  OSV60_RS02075 (OSV60_02075) - 439584..440399 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  OSV60_RS02080 (OSV60_02080) adeT2 440479..441465 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24592.72 Da        Isoelectric Point: 9.7140

>NTDB_id=759955 OSV60_RS02065 WP_000472271.1 436890..437525(-) (comF) [Acinetobacter baumannii strain 86II/2C]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALNQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=759955 OSV60_RS02065 WP_000472271.1 436890..437525(-) (comF) [Acinetobacter baumannii strain 86II/2C]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGAGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTGAA
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986