Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OSV60_RS01580 Genome accession   NZ_CP113077
Coordinates   334172..334912 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 86II/2C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329172..339912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV60_RS01565 (OSV60_01565) ponA 329758..332313 (-) 2556 WP_141546406.1 penicillin-binding protein PBP1a -
  OSV60_RS01570 (OSV60_01570) pilM 332476..333534 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OSV60_RS01575 (OSV60_01575) pilN 333534..334175 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  OSV60_RS01580 (OSV60_01580) pilO 334172..334912 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OSV60_RS01585 (OSV60_01585) pilP 334923..335450 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  OSV60_RS01590 (OSV60_01590) pilQ 335513..337678 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OSV60_RS01595 (OSV60_01595) aroK 337690..338259 (+) 570 WP_000643712.1 shikimate kinase AroK -
  OSV60_RS01600 (OSV60_01600) aroB 338288..339370 (+) 1083 WP_098713311.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=759945 OSV60_RS01580 WP_000076101.1 334172..334912(+) (pilO) [Acinetobacter baumannii strain 86II/2C]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=759945 OSV60_RS01580 WP_000076101.1 334172..334912(+) (pilO) [Acinetobacter baumannii strain 86II/2C]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683