Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OSH16_RS16650 Genome accession   NZ_CP113072
Coordinates   3555709..3556839 (+) Length   376 a.a.
NCBI ID   WP_168727007.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3550709..3561839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS16625 (OSH16_16625) - 3550970..3551176 (-) 207 WP_000182542.1 hypothetical protein -
  OSH16_RS16630 (OSH16_16630) - 3551230..3553344 (-) 2115 WP_168727010.1 TonB-dependent copper receptor -
  OSH16_RS16635 (OSH16_16635) - 3553416..3553844 (-) 429 WP_168727009.1 DUF2946 family protein -
  OSH16_RS16640 (OSH16_16640) def 3553881..3554411 (-) 531 WP_001196539.1 peptide deformylase -
  OSH16_RS16645 (OSH16_16645) tsaP 3554534..3555688 (+) 1155 WP_168727008.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OSH16_RS16650 (OSH16_16650) dprA 3555709..3556839 (+) 1131 WP_168727007.1 DNA-processing protein DprA Machinery gene
  OSH16_RS16655 (OSH16_16655) - 3556890..3557459 (+) 570 WP_098715214.1 Sua5/YciO/YrdC/YwlC family protein -
  OSH16_RS16660 (OSH16_16660) - 3557851..3558771 (-) 921 WP_001994180.1 DMT family transporter -
  OSH16_RS16665 (OSH16_16665) - 3558877..3559527 (-) 651 WP_086227614.1 TetR/AcrR family transcriptional regulator -
  OSH16_RS16670 (OSH16_16670) - 3559664..3560878 (+) 1215 WP_000372838.1 MFS transporter -
  OSH16_RS16675 (OSH16_16675) - 3560900..3561664 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41935.49 Da        Isoelectric Point: 6.6297

>NTDB_id=759843 OSH16_RS16650 WP_168727007.1 3555709..3556839(+) (dprA) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MLTQLSSHQYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAKNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEETNTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=759843 OSH16_RS16650 WP_168727007.1 3555709..3556839(+) (dprA) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGCTCACTCAACTTTCTTCACACCAATACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAAGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCAGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAGCCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTAAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAACTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)

DprA winged helix domain (DprA_WH)

(331-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

100

100

1
  dprA Acinetobacter baumannii D1279779

98.138

100

0.981
  dprA Acinetobacter baylyi ADP1

70.079

100

0.71
  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38