Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OSH16_RS16355 Genome accession   NZ_CP113072
Coordinates   3493368..3494936 (+) Length   522 a.a.
NCBI ID   WP_206677389.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3488368..3499936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS16335 (OSH16_16335) - 3488860..3490161 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  OSH16_RS16340 (OSH16_16340) thrC 3490217..3491356 (+) 1140 WP_000063593.1 threonine synthase -
  OSH16_RS16345 (OSH16_16345) pbpG 3491463..3492509 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OSH16_RS16350 (OSH16_16350) - 3492722..3493357 (+) 636 WP_000633799.1 response regulator -
  OSH16_RS16355 (OSH16_16355) pilS 3493368..3494936 (+) 1569 WP_206677389.1 PAS domain-containing sensor histidine kinase Regulator
  OSH16_RS16360 (OSH16_16360) pilR 3494961..3496382 (+) 1422 WP_168727019.1 sigma-54 dependent transcriptional regulator Regulator
  OSH16_RS16365 (OSH16_16365) - 3496386..3497570 (-) 1185 WP_000939107.1 S41 family peptidase -
  OSH16_RS16370 (OSH16_16370) gpmI 3497586..3499133 (-) 1548 WP_031963978.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59227.76 Da        Isoelectric Point: 6.4995

>NTDB_id=759839 OSH16_RS16355 WP_206677389.1 3493368..3494936(+) (pilS) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLVKWHADLFEILKFGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDVKHFIDTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNAPDSPYITINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=759839 OSH16_RS16355 WP_206677389.1 3493368..3494936(+) (pilS) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTAGTTTTAACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGGTATTCGCTCTTAAGTCTTGTTCAGCTGTTATGCTTTAAATTTATTGCCACTCAAGCCACGCGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTTTGAGTTTACTGACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
TTTACTCTATGTAATTGCCATCTTTACTTCGGCGATTTTACTCAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATCGCTGTTATTTACCAACGATTTGTAGGTAGTCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTTTTATTTTTTGTGGTTCACGGTATTGGCCAAATTGCTGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATTGAACTTTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTT
TAGATGAGAATTATGACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCCTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGTGAAGTGGCATGCCGATTTATTTGAAATTTTAAAGTTTGGTGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCATACTCCATCAACATTAAAGTGCAACACCTTTTGGTCCCACAACAAACGTTAACTCTGC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCCCAGCAGCTTAAGCTTGCTGCTCTAGGACAGCTCTCAGCAAGT
ATTGCACATGAGATCCGCAACCCTCTCGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGTCATATGATTGGCAAACAAACCAAACGCATTGATAGTATTGTTCAAGATACTTTAGGGCTTGCTCGTA
GTGAAAGAACACATCCTATCCAGATCGATGTAAAACACTTCATAGATACATTGCTCGAAGAAGATTTATTTGACGTTAAA
CATTCAATTCAACTTAAAATTTCGGATAGTTCTTTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATCAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCCCCGACTCACCGTACATTACGATCAACATTCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

100

100

1