Detailed information NTG0759836

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I92_RS06665
• Genome accession: NZ_CP124654
• Coordinates: 1420190..1421194 (+)
• Length: 334 a.a.
• NCBI ID: WP_003109327.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 2021CK-01851
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1415190..1426194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I92_RS06635 (P7I92_06635)	fghA	1415282..1416133 (+)	852	WP_003163269.1	S-formylglutathione hydrolase	-
P7I92_RS06640 (P7I92_06640)	ispF	1416204..1416677 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I92_RS06645 (P7I92_06645)	truD	1416674..1417741 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
P7I92_RS06650 (P7I92_06650)	surE	1417729..1418478 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I92_RS06655 (P7I92_06655)	-	1418511..1419146 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I92_RS06660 (P7I92_06660)	-	1419192..1420085 (+)	894	WP_009313547.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I92_RS06665 (P7I92_06665)	rpoS	1420190..1421194 (+)	1005	WP_003109327.1	RNA polymerase sigma factor RpoS	Regulator
P7I92_RS06670 (P7I92_06670)	fdxA	1421621..1421944 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P7I92_RS06675 (P7I92_06675)	mutS	1422011..1424578 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I92_RS06680 (P7I92_06680)	-	1424704..1425711 (-)	1008	WP_031638797.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38265.41 Da
• Isoelectric Point: 5.0478

>NTDB_id=759836 P7I92_RS06665 WP_003109327.1 1420190..1421194(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01851]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRTTPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=759836 P7I92_RS06665 WP_003109327.1 1420190..1421194(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01851]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGACAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653