Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OSH16_RS14770 Genome accession   NZ_CP113072
Coordinates   3149886..3150296 (-) Length   136 a.a.
NCBI ID   WP_005124713.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3144886..3155296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS14740 (OSH16_14740) - 3144972..3145241 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  OSH16_RS14745 (OSH16_14745) rapZ 3145238..3146089 (-) 852 WP_000821671.1 RNase adapter RapZ -
  OSH16_RS14750 (OSH16_14750) panC 3146112..3146960 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  OSH16_RS14755 (OSH16_14755) panB 3146964..3147773 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  OSH16_RS14760 (OSH16_14760) folK 3147819..3148301 (-) 483 WP_031987940.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OSH16_RS14765 (OSH16_14765) pcnB 3148298..3149761 (-) 1464 WP_031987942.1 polynucleotide adenylyltransferase PcnB -
  OSH16_RS14770 (OSH16_14770) comEA 3149886..3150296 (-) 411 WP_005124713.1 ComEA family DNA-binding protein Machinery gene
  OSH16_RS14775 (OSH16_14775) mazG 3150265..3151071 (-) 807 WP_168726908.1 nucleoside triphosphate pyrophosphohydrolase -
  OSH16_RS14780 (OSH16_14780) - 3151183..3151956 (+) 774 WP_102759853.1 SDR family oxidoreductase -
  OSH16_RS14785 (OSH16_14785) - 3152001..3154307 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15626.92 Da        Isoelectric Point: 10.3495

>NTDB_id=759828 OSH16_RS14770 WP_005124713.1 3149886..3150296(-) (comEA) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MQYSMRFWKNKYFLLIMLCLGVISPSVCAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=759828 OSH16_RS14770 WP_005124713.1 3149886..3150296(-) (comEA) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTGCGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGTTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

100

100

1
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

43.511

96.324

0.419