Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OSH16_RS01460 Genome accession   NZ_CP113072
Coordinates   315304..315831 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310304..320831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS01445 (OSH16_01445) pilM 312857..313915 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OSH16_RS01450 (OSH16_01450) pilN 313915..314556 (+) 642 WP_118978219.1 PilN domain-containing protein Machinery gene
  OSH16_RS01455 (OSH16_01455) pilO 314553..315293 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OSH16_RS01460 (OSH16_01460) pilP 315304..315831 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OSH16_RS01465 (OSH16_01465) pilQ 315894..318059 (+) 2166 WP_031993779.1 type IV pilus secretin PilQ Machinery gene
  OSH16_RS01470 (OSH16_01470) aroK 318071..318640 (+) 570 WP_000643712.1 shikimate kinase AroK -
  OSH16_RS01475 (OSH16_01475) aroB 318669..319751 (+) 1083 WP_168726692.1 3-dehydroquinate synthase -
  OSH16_RS01480 (OSH16_01480) - 319767..320642 (+) 876 WP_168726693.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=759802 OSH16_RS01460 WP_000695065.1 315304..315831(+) (pilP) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=759802 OSH16_RS01460 WP_000695065.1 315304..315831(+) (pilP) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714