Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   OSH13_RS07970 Genome accession   NZ_CP113070
Coordinates   1693802..1694182 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1688802..1699182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH13_RS07940 (OSH13_07940) kdsB 1689705..1690466 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSH13_RS07945 (OSH13_07945) - 1690478..1691458 (+) 981 WP_004747384.1 DNA polymerase III, delta' subunit -
  OSH13_RS07950 (OSH13_07950) - 1691470..1691811 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  OSH13_RS07955 (OSH13_07955) - 1691829..1692602 (+) 774 WP_000497302.1 TatD family hydrolase -
  OSH13_RS07960 (OSH13_07960) - 1692640..1693248 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  OSH13_RS07965 (OSH13_07965) - 1693258..1693812 (+) 555 WP_000841371.1 type II secretion system protein -
  OSH13_RS07970 (OSH13_07970) xcpV 1693802..1694182 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  OSH13_RS07975 (OSH13_07975) xcpW 1694182..1694883 (+) 702 WP_032025534.1 type II secretion system minor pseudopilin GspJ Machinery gene
  OSH13_RS07980 (OSH13_07980) gspK 1694883..1695842 (+) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  OSH13_RS07985 (OSH13_07985) - 1696072..1696668 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  OSH13_RS07990 (OSH13_07990) ung 1696719..1697432 (+) 714 WP_001177530.1 uracil-DNA glycosylase -
  OSH13_RS07995 (OSH13_07995) - 1697429..1698553 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  OSH13_RS08000 (OSH13_08000) tadA 1698560..1699063 (+) 504 WP_031946509.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=759724 OSH13_RS07970 WP_000836911.1 1693802..1694182(+) (xcpV) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=759724 OSH13_RS07970 WP_000836911.1 1693802..1694182(+) (xcpV) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1