Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   OS088_RS08835 Genome accession   NZ_CP113051
Coordinates   1715105..1715821 (+) Length   238 a.a.
NCBI ID   WP_209206015.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Viktor     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1710105..1720821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS088_RS08805 - 1710321..1710947 (+) 627 WP_267814062.1 nitroreductase family protein -
  OS088_RS08810 - 1711308..1712093 (+) 786 Protein_1697 carbon-nitrogen family hydrolase -
  OS088_RS14525 hld 1712692..1712772 (-) 81 WP_000046022.1 delta-hemolysin -
  OS088_RS08820 - 1713062..1713625 (+) 564 WP_115289668.1 accessory gene regulator AgrB -
  OS088_RS08825 agrD 1713629..1713769 (+) 141 WP_000735197.1 cyclic lactone autoinducer peptide AgrD -
  OS088_RS08830 agrC 1713794..1715086 (+) 1293 WP_000387809.1 quorum-sensing sensor histidine kinase AgrC -
  OS088_RS08835 agrA 1715105..1715821 (+) 717 WP_209206015.1 quorum-sensing response regulator AgrA Regulator
  OS088_RS08840 - 1715893..1716000 (+) 108 WP_154284415.1 hypothetical protein -
  OS088_RS08845 - 1716189..1717148 (-) 960 WP_154284416.1 carbohydrate kinase family protein -
  OS088_RS08850 - 1717145..1718629 (-) 1485 WP_154284417.1 sucrose-6-phosphate hydrolase -
  OS088_RS08855 - 1718778..1719728 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27931.98 Da        Isoelectric Point: 6.0927

>NTDB_id=759598 OS088_RS08835 WP_209206015.1 1715105..1715821(+) (agrA) [Staphylococcus aureus strain Viktor]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDLKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=759598 OS088_RS08835 WP_209206015.1 1715105..1715821(+) (agrA) [Staphylococcus aureus strain Viktor]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATCCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACACGTATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCTCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTTGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996