Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H7R23_RS01625 Genome accession   NZ_AP021936
Coordinates   344978..345619 (+) Length   213 a.a.
NCBI ID   WP_017481732.1    Uniprot ID   A0A9X3QTN4
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339978..350619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS01605 (WP2W18E11_03030) - 340022..340354 (+) 333 WP_002116981.1 hypothetical protein -
  H7R23_RS01610 (WP2W18E11_03040) rrmA 340357..341181 (+) 825 WP_005078486.1 putative RNA methyltransferase -
  H7R23_RS01615 (WP2W18E11_03050) ponA 341197..343758 (-) 2562 WP_182917758.1 penicillin-binding protein PBP1a -
  H7R23_RS01620 (WP2W18E11_03060) pilM 343920..344978 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  H7R23_RS01625 (WP2W18E11_03070) pilN 344978..345619 (+) 642 WP_017481732.1 PilN domain-containing protein Machinery gene
  H7R23_RS01630 (WP2W18E11_03080) pilO 345616..346395 (+) 780 WP_017481731.1 type 4a pilus biogenesis protein PilO Machinery gene
  H7R23_RS01635 (WP2W18E11_03090) pilP 346407..346934 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  H7R23_RS01640 (WP2W18E11_03100) pilQ 346997..349123 (+) 2127 WP_182917759.1 type IV pilus secretin PilQ Machinery gene
  H7R23_RS01645 (WP2W18E11_03110) aroK 349135..349704 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23949.41 Da        Isoelectric Point: 5.4186

>NTDB_id=75958 H7R23_RS01625 WP_017481732.1 344978..345619(+) (pilN) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLV
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=75958 H7R23_RS01625 WP_017481732.1 344978..345619(+) (pilN) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGCGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGTG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681

Multiple sequence alignment