Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OS089_RS04570 Genome accession   NZ_CP113049
Coordinates   942268..943254 (-) Length   328 a.a.
NCBI ID   WP_267814053.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Ahri     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 937268..948254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS089_RS04545 - 937528..937875 (-) 348 WP_001242107.1 hypothetical protein -
  OS089_RS04550 - 938061..938654 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  OS089_RS04555 - 938758..939123 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  OS089_RS04560 yjbH 939146..939952 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  OS089_RS04565 pepF 940412..942220 (-) 1809 WP_021758235.1 oligoendopeptidase F -
  OS089_RS04570 coiA 942268..943254 (-) 987 WP_267814053.1 competence protein CoiA Machinery gene
  OS089_RS04575 mecA 943375..944094 (-) 720 WP_267811016.1 adaptor protein MecA -
  OS089_RS04580 spxA 944465..944860 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  OS089_RS04585 trpS 945155..946144 (+) 990 WP_267814054.1 tryptophan--tRNA ligase -
  OS089_RS04590 - 946170..947815 (-) 1646 Protein_912 IS1182-like element ISSau3 family transposase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38775.30 Da        Isoelectric Point: 9.6529

>NTDB_id=759541 OS089_RS04570 WP_267814053.1 942268..943254(-) (coiA) [Staphylococcus aureus strain Ahri]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLESDNLNYFKLKKFIVALESKTTIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=759541 OS089_RS04570 WP_267814053.1 942268..943254(-) (coiA) [Staphylococcus aureus strain Ahri]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGAAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACTACAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963
  coiA Staphylococcus aureus N315

96.341

100

0.963