Detailed information NTG0759534

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I80_RS07590
• Genome accession: NZ_CP124649
• Coordinates: 1603662..1604666 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2020CK-00218
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1598662..1609666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I80_RS07560 (P7I80_07560)	fghA	1598754..1599605 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
P7I80_RS07565 (P7I80_07565)	ispF	1599676..1600149 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I80_RS07570 (P7I80_07570)	truD	1600146..1601213 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
P7I80_RS07575 (P7I80_07575)	surE	1601201..1601950 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I80_RS07580 (P7I80_07580)	-	1601983..1602618 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I80_RS07585 (P7I80_07585)	-	1602664..1603557 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I80_RS07590 (P7I80_07590)	rpoS	1603662..1604666 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I80_RS07595 (P7I80_07595)	fdxA	1605093..1605416 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P7I80_RS07600 (P7I80_07600)	mutS	1605483..1608050 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I80_RS07605 (P7I80_07605)	-	1608176..1609183 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=759534 P7I80_RS07590 WP_003113871.1 1603662..1604666(+) (rpoS) [Pseudomonas aeruginosa strain 2020CK-00218]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=759534 P7I80_RS07590 WP_003113871.1 1603662..1604666(+) (rpoS) [Pseudomonas aeruginosa strain 2020CK-00218]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653