Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P7I81_RS30145 Genome accession   NZ_CP124648
Coordinates   6459600..6460196 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain 2020CK-00220     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6454600..6465196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I81_RS30120 (P7I81_30120) - 6454946..6455143 (-) 198 Protein_5945 TetR family transcriptional regulator -
  P7I81_RS30125 (P7I81_30125) - 6455236..6456819 (+) 1584 WP_079382168.1 NAD(P)/FAD-dependent oxidoreductase -
  P7I81_RS30130 (P7I81_30130) - 6456816..6457703 (+) 888 WP_003087246.1 SDR family NAD(P)-dependent oxidoreductase -
  P7I81_RS30135 (P7I81_30135) - 6457777..6458316 (+) 540 WP_033941969.1 CbrC family protein -
  P7I81_RS30140 (P7I81_30140) - 6458329..6459477 (-) 1149 WP_034028862.1 acyl-CoA dehydrogenase family protein -
  P7I81_RS30145 (P7I81_30145) recR 6459600..6460196 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  P7I81_RS30150 (P7I81_30150) - 6460275..6460601 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  P7I81_RS30155 (P7I81_30155) dnaX 6460647..6462734 (-) 2088 WP_282425959.1 DNA polymerase III subunit gamma/tau -
  P7I81_RS30160 (P7I81_30160) - 6462771..6463637 (+) 867 WP_124090054.1 ABC transporter substrate-binding protein -
  P7I81_RS30170 (P7I81_30170) - 6463891..6464268 (-) 378 WP_057385739.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=759515 P7I81_RS30145 WP_003087237.1 6459600..6460196(-) (recR) [Pseudomonas aeruginosa strain 2020CK-00220]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=759515 P7I81_RS30145 WP_003087237.1 6459600..6460196(-) (recR) [Pseudomonas aeruginosa strain 2020CK-00220]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGTCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48