Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   P7I81_RS21300 Genome accession   NZ_CP124648
Coordinates   4530579..4530908 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2020CK-00220     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4525579..4535908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I81_RS21285 (P7I81_21285) - 4526224..4527174 (+) 951 WP_020750837.1 NAD-dependent epimerase/dehydratase family protein -
  P7I81_RS21290 (P7I81_21290) - 4527217..4528236 (+) 1020 WP_003110852.1 glycosyltransferase family 4 protein -
  P7I81_RS21295 (P7I81_21295) - 4528391..4530388 (+) 1998 WP_074222801.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  P7I81_RS21300 (P7I81_21300) comEA/comE1 4530579..4530908 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  P7I81_RS21310 (P7I81_21310) - 4531125..4532321 (-) 1197 WP_124089807.1 amino acid aminotransferase -
  P7I81_RS21315 (P7I81_21315) uvrB 4532509..4534512 (+) 2004 WP_282425946.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=759491 P7I81_RS21300 WP_003091430.1 4530579..4530908(+) (comEA/comE1) [Pseudomonas aeruginosa strain 2020CK-00220]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=759491 P7I81_RS21300 WP_003091430.1 4530579..4530908(+) (comEA/comE1) [Pseudomonas aeruginosa strain 2020CK-00220]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385