Detailed information NTG0759487

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I81_RS18845
• Genome accession: NZ_CP124648
• Coordinates: 4008771..4009775 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2020CK-00220
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4003771..4014775

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I81_RS18815 (P7I81_18815)	fghA	4003863..4004714 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
P7I81_RS18820 (P7I81_18820)	ispF	4004785..4005258 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I81_RS18825 (P7I81_18825)	truD	4005255..4006322 (+)	1068	WP_058176082.1	tRNA pseudouridine(13) synthase TruD	-
P7I81_RS18830 (P7I81_18830)	surE	4006310..4007059 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I81_RS18835 (P7I81_18835)	-	4007092..4007727 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I81_RS18840 (P7I81_18840)	-	4007773..4008666 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I81_RS18845 (P7I81_18845)	rpoS	4008771..4009775 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I81_RS18850 (P7I81_18850)	fdxA	4010202..4010525 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P7I81_RS18855 (P7I81_18855)	mutS	4010592..4013159 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I81_RS18860 (P7I81_18860)	-	4013285..4014292 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=759487 P7I81_RS18845 WP_003113871.1 4008771..4009775(+) (rpoS) [Pseudomonas aeruginosa strain 2020CK-00220]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=759487 P7I81_RS18845 WP_003113871.1 4008771..4009775(+) (rpoS) [Pseudomonas aeruginosa strain 2020CK-00220]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653