Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   OS079_RS13005 Genome accession   NZ_CP113042
Coordinates   2578827..2579897 (-) Length   356 a.a.
NCBI ID   WP_000775708.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Seraphine     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2573827..2584897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS079_RS12965 gcvPA 2574004..2575350 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OS079_RS12970 gcvT 2575370..2576461 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OS079_RS12975 - 2576620..2577144 (-) 525 WP_267837924.1 shikimate kinase -
  OS079_RS12980 - 2577134..2577280 (-) 147 WP_001789879.1 hypothetical protein -
  OS079_RS12985 comGF 2577377..2577874 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  OS079_RS12990 comGE 2577792..2578091 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OS079_RS12995 comGD 2578078..2578524 (-) 447 WP_001791635.1 competence type IV pilus minor pilin ComGD Machinery gene
  OS079_RS13000 comGC 2578502..2578813 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OS079_RS13005 comGB 2578827..2579897 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  OS079_RS13010 comGA 2579869..2580843 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  OS079_RS13015 - 2580895..2581518 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OS079_RS13020 - 2581515..2581844 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OS079_RS13025 - 2581844..2582830 (-) 987 WP_000161314.1 ROK family glucokinase -
  OS079_RS13030 - 2582827..2583030 (-) 204 WP_000087561.1 YqgQ family protein -
  OS079_RS13035 - 2583011..2584474 (-) 1464 WP_267811064.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41364.77 Da        Isoelectric Point: 10.0092

>NTDB_id=759425 OS079_RS13005 WP_000775708.1 2578827..2579897(-) (comGB) [Staphylococcus aureus strain Seraphine]
MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=759425 OS079_RS13005 WP_000775708.1 2578827..2579897(-) (comGB) [Staphylococcus aureus strain Seraphine]
GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997