Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LDO80_RS00540 Genome accession   NZ_AP024933
Coordinates   90597..91172 (-) Length   191 a.a.
NCBI ID   WP_143584205.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA3-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 85597..96172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO80_RS00505 (TthAA37_00950) - 86488..86724 (-) 237 WP_143584193.1 hypothetical protein -
  LDO80_RS00510 (TthAA37_00960) - 86709..87779 (-) 1071 WP_143584196.1 M20 family metallopeptidase -
  LDO80_RS00515 (TthAA37_00970) rlmB 87784..88500 (-) 717 WP_011174056.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LDO80_RS00520 (TthAA37_00980) - 88553..88987 (+) 435 WP_008632570.1 universal stress protein -
  LDO80_RS00525 (TthAA37_00990) - 88988..89503 (+) 516 WP_011174057.1 LOG family protein -
  LDO80_RS00530 (TthAA37_01000) - 89500..89868 (+) 369 WP_223965829.1 hypothetical protein -
  LDO80_RS00535 (TthAA37_01010) - 89865..90614 (+) 750 WP_143584202.1 HAD family hydrolase -
  LDO80_RS00540 (TthAA37_01020) ruvA 90597..91172 (-) 576 WP_143584205.1 Holliday junction branch migration protein RuvA Machinery gene
  LDO80_RS00545 (TthAA37_01030) - 91169..91933 (-) 765 WP_011174060.1 enoyl-CoA hydratase/isomerase family protein -
  LDO80_RS00550 (TthAA37_01040) - 92011..94701 (+) 2691 WP_223965831.1 2-oxoglutarate dehydrogenase E1 component -
  LDO80_RS00555 (TthAA37_01050) odhB 94712..95929 (+) 1218 WP_223965832.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20372.04 Da        Isoelectric Point: 8.5125

>NTDB_id=75941 LDO80_RS00540 WP_143584205.1 90597..91172(-) (ruvA) [Thermus thermophilus strain AA3-7]
MIRYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQALEEGKEVGVHTHLLLKEEGLSLYGFPDEENLALFELLLSVSGV
GPKVALALLSALPPRLLARALLEGDARLLTSASGVGKRLAERIALELKGKVPPHLLAGEKVDSEAAEEAVMALAALGFKE
AQARAVVLDLLAQNPKARAQDLIKEALKRLR

Nucleotide


Download         Length: 576 bp        

>NTDB_id=75941 LDO80_RS00540 WP_143584205.1 90597..91172(-) (ruvA) [Thermus thermophilus strain AA3-7]
ATGATCCGCTACCTCCGGGGCCTGGTCCTCAAGAAGGAGGCGGGCGGCTTCGTCCTTCTCGCCGGGGGGGTGGGGTTCTT
CCTCCAGGCCCCCACGCCCTTCCTCCAGGCCCTGGAGGAGGGGAAGGAGGTGGGGGTCCACACCCACCTCCTCCTCAAGG
AGGAGGGGCTGTCCCTCTACGGCTTCCCCGACGAGGAGAACCTCGCCCTCTTTGAACTCCTCCTCTCGGTGAGCGGCGTG
GGGCCCAAGGTGGCCCTCGCCCTCCTCTCGGCCCTGCCCCCTAGGCTCCTCGCCCGGGCCCTCCTGGAGGGGGACGCGAG
GCTCCTCACCTCGGCGAGCGGGGTGGGGAAAAGGCTCGCGGAAAGGATCGCCCTGGAGCTCAAGGGGAAGGTGCCCCCCC
ACCTCCTCGCCGGGGAGAAGGTGGATAGCGAGGCCGCGGAGGAGGCGGTGATGGCCCTCGCCGCCTTGGGGTTCAAGGAG
GCCCAGGCGCGGGCGGTGGTCCTGGACCTCCTGGCCCAAAACCCCAAGGCCCGGGCCCAGGACCTGATCAAGGAGGCCCT
AAAGCGCCTCCGCTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(145-190)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.158

100

0.361

Multiple sequence alignment