Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   P7I90_RS27340 Genome accession   NZ_CP124641
Coordinates   5887354..5887878 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2021CK-01198     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5882354..5892878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I90_RS27325 (P7I90_27325) aroB 5883470..5884576 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  P7I90_RS27330 (P7I90_27330) aroK 5884626..5885144 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P7I90_RS27335 (P7I90_27335) pilQ 5885156..5887300 (-) 2145 WP_003135767.1 type 4a pilus secretin PilQ Machinery gene
  P7I90_RS27340 (P7I90_27340) comL/pilP 5887354..5887878 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P7I90_RS27345 (P7I90_27345) pilO 5887875..5888498 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P7I90_RS27350 (P7I90_27350) pilN 5888495..5889091 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P7I90_RS27355 (P7I90_27355) pilM 5889091..5890155 (-) 1065 WP_034074518.1 type IV pilus assembly protein PilM Machinery gene
  P7I90_RS27360 (P7I90_27360) - 5890340..5892811 (+) 2472 WP_034074516.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=759299 P7I90_RS27340 WP_003095836.1 5887354..5887878(-) (comL/pilP) [Pseudomonas aeruginosa strain 2021CK-01198]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=759299 P7I90_RS27340 WP_003095836.1 5887354..5887878(-) (comL/pilP) [Pseudomonas aeruginosa strain 2021CK-01198]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGTGGCGGTTCCGATTTCGCCGACCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362