Detailed information NTG0759241

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I90_RS06700
• Genome accession: NZ_CP124641
• Coordinates: 1442879..1443883 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2021CK-01198
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1437879..1448883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I90_RS06670 (P7I90_06670)	fghA	1437971..1438822 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
P7I90_RS06675 (P7I90_06675)	ispF	1438893..1439366 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I90_RS06680 (P7I90_06680)	truD	1439363..1440430 (+)	1068	WP_171884277.1	tRNA pseudouridine(13) synthase TruD	-
P7I90_RS06685 (P7I90_06685)	surE	1440418..1441167 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I90_RS06690 (P7I90_06690)	-	1441200..1441835 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I90_RS06695 (P7I90_06695)	-	1441881..1442774 (+)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I90_RS06700 (P7I90_06700)	rpoS	1442879..1443883 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I90_RS06705 (P7I90_06705)	fdxA	1444309..1444632 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P7I90_RS06710 (P7I90_06710)	mutS	1444699..1447011 (-)	2313	Protein_1329	DNA mismatch repair protein MutS	-
P7I90_RS06715 (P7I90_06715)	-	1447129..1447497 (-)	369	WP_003127781.1	Mor transcription activator family protein	-
P7I90_RS06720 (P7I90_06720)	-	1447494..1448042 (-)	549	WP_003117363.1	hypothetical protein	-
P7I90_RS06725 (P7I90_06725)	-	1448042..1448608 (-)	567	WP_003117362.1	regulatory protein GemA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=759241 P7I90_RS06700 WP_003113871.1 1442879..1443883(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01198]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=759241 P7I90_RS06700 WP_003113871.1 1442879..1443883(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01198]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653