Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OS077_RS12680 Genome accession   NZ_CP113016
Coordinates   2531238..2531684 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Azir     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2526238..2536684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS077_RS12650 gcvPA 2527164..2528510 (-) 1347 WP_000019690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OS077_RS12655 gcvT 2528530..2529621 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  OS077_RS12660 - 2529780..2530304 (-) 525 WP_001015120.1 shikimate kinase -
  OS077_RS12665 - 2530294..2530440 (-) 147 WP_001792109.1 hypothetical protein -
  OS077_RS12670 comGF 2530537..2531034 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  OS077_RS12675 comGE 2530952..2531251 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OS077_RS12680 comGD 2531238..2531684 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  OS077_RS12685 comGC 2531662..2531973 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OS077_RS12690 comGB 2531987..2533057 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  OS077_RS12695 comGA 2533029..2534003 (-) 975 WP_031587486.1 competence type IV pilus ATPase ComGA Machinery gene
  OS077_RS12700 - 2534055..2534678 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OS077_RS12705 - 2534675..2535004 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OS077_RS12710 - 2535004..2535990 (-) 987 WP_000161314.1 ROK family glucokinase -
  OS077_RS12715 - 2535987..2536190 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=759118 OS077_RS12680 WP_001788899.1 2531238..2531684(-) (comGD) [Staphylococcus aureus strain Azir]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=759118 OS077_RS12680 WP_001788899.1 2531238..2531684(-) (comGD) [Staphylococcus aureus strain Azir]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1