Detailed information NTG0759048

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I87_RS08965
• Genome accession: NZ_CP124632
• Coordinates: 1899994..1900998 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2021CK-01162
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1894994..1905998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I87_RS08935 (P7I87_08935)	fghA	1895086..1895937 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
P7I87_RS08940 (P7I87_08940)	ispF	1896008..1896481 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I87_RS08945 (P7I87_08945)	truD	1896478..1897545 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
P7I87_RS08950 (P7I87_08950)	surE	1897533..1898282 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I87_RS08955 (P7I87_08955)	-	1898315..1898950 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I87_RS08960 (P7I87_08960)	-	1898996..1899889 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I87_RS08965 (P7I87_08965)	rpoS	1899994..1900998 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I87_RS08970 (P7I87_08970)	fdxA	1901424..1901747 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P7I87_RS08975 (P7I87_08975)	mutS	1901814..1904381 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I87_RS08980 (P7I87_08980)	-	1904507..1905513 (-)	1007	Protein_1777	TolB-like translocation protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=759048 P7I87_RS08965 WP_003113871.1 1899994..1900998(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01162]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=759048 P7I87_RS08965 WP_003113871.1 1899994..1900998(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01162]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653