Detailed information NTG0075885

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDO10_RS00650
• Genome accession: NZ_AP024929
• Coordinates: 115614..116690 (+)
• Length: 358 a.a.
• NCBI ID: WP_223971223.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA2-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 110614..121690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO10_RS00630 (TthAA22_01190)	-	111111..111893 (+)	783	WP_223971220.1	RNA methyltransferase	-
LDO10_RS00635 (TthAA22_01200)	groES	111991..112296 (+)	306	WP_011174076.1	co-chaperone GroES	-
LDO10_RS00640 (TthAA22_01210)	groL	112309..113940 (+)	1632	WP_011174077.1	chaperonin GroEL	-
LDO10_RS00645 (TthAA22_01220)	-	114004..115536 (-)	1533	WP_143584236.1	thermostable carboxypeptidase 1	-
LDO10_RS00650 (TthAA22_01230)	pilD	115614..116690 (+)	1077	WP_223971223.1	A24 family peptidase	Machinery gene
LDO10_RS00655 (TthAA22_01240)	-	116728..117231 (+)	504	WP_143584241.1	DUF2939 domain-containing protein	-
LDO10_RS00660 (TthAA22_01250)	-	117245..118165 (+)	921	WP_143584244.1	nitroreductase family protein	-
LDO10_RS00665 (TthAA22_01260)	-	118119..118916 (-)	798	WP_223971225.1	C40 family peptidase	-
LDO10_RS00670 (TthAA22_01270)	-	118917..119675 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
LDO10_RS00675 (TthAA22_01280)	recF	119660..120691 (-)	1032	WP_223965847.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 38341.76 Da
• Isoelectric Point: 7.7132

>NTDB_id=75885 LDO10_RS00650 WP_223971223.1 115614..116690(+) (pilD) [Thermus thermophilus strain AA2-2]
MWPLLALVLGLVVGSFLNVVIHRLPRGESVVYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLFLAFLVALAFIDVDTFELPDLLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGG
LALVAGYGNFFLRRFKEGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVAFPDRLTLPLLPLAFLLA
PALGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLG
LLLRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1077 bp

>NTDB_id=75885 LDO10_RS00650 WP_223971223.1 115614..116690(+) (pilD) [Thermus thermophilus strain AA2-2]
ATGTGGCCCCTTCTCGCCCTGGTCCTCGGCCTCGTGGTGGGCTCCTTTTTGAACGTGGTCATCCACCGCCTGCCCCGGGG
GGAGTCCGTCGTCTACCCCCCATCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCTTCCTCGC
CTTTCTCGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCTCCTCACCTACGGCCTCCTCTTCCTTG
GGCTTTTGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGG
CTCGCCCTGGTGGCGGGTTACGGGAACTTTTTCCTGAGGCGCTTTAAGGAGGGGAGGGCCGAGGTTCCCGTGGGGCCCCA
CCAGGTCCACATGGCGGCCCTCTTCGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCCTGGGCCC
TCTCCGCCCGCACGGGGCGGGCGGTGGCCTTCCCCGACCGGCTCACCCTGCCCCTTTTGCCTCTCGCCTTCCTCCTTGCC
CCCGCCCTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGCGGGCT
TTACTGGGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTC
TGGGGGCCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTCTGGGC
CTTCTCCTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGC
CCTCTGGGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (221-321)

• Type IV leader peptidase family (Peptidase_A24) (104-211)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.307	100	0.461