Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P7I83_RS02490 Genome accession   NZ_CP124624
Coordinates   547483..548208 (-) Length   241 a.a.
NCBI ID   WP_264974572.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01157     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 542483..553208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I83_RS02465 (P7I83_02465) - 542949..543464 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  P7I83_RS02470 (P7I83_02470) rarD 544154..545050 (-) 897 WP_003103301.1 EamA family transporter RarD -
  P7I83_RS02475 (P7I83_02475) - 545253..546227 (-) 975 WP_003129062.1 serine/threonine protein kinase -
  P7I83_RS02480 (P7I83_02480) - 546289..547047 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  P7I83_RS02485 (P7I83_02485) - 547115..547441 (-) 327 WP_058134584.1 YfiM family lipoprotein -
  P7I83_RS02490 (P7I83_02490) comF 547483..548208 (-) 726 WP_264974572.1 ComF family protein Machinery gene
  P7I83_RS02495 (P7I83_02495) - 548347..548640 (-) 294 WP_003084806.1 hypothetical protein -
  P7I83_RS02500 (P7I83_02500) - 548694..549620 (-) 927 WP_282393532.1 LysR family transcriptional regulator -
  P7I83_RS02505 (P7I83_02505) - 549738..550496 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  P7I83_RS02510 (P7I83_02510) - 550573..550821 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  P7I83_RS02515 (P7I83_02515) - 550832..552208 (+) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  P7I83_RS02520 (P7I83_02520) - 552210..553088 (+) 879 WP_015502245.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26998.50 Da        Isoelectric Point: 9.7228

>NTDB_id=758841 P7I83_RS02490 WP_264974572.1 547483..548208(-) (comF) [Pseudomonas aeruginosa strain 2021CK-01157]
MSFPLHPLTRWLLPPPACLLCAACSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAVWPLGRLLGELLAEHLRQRYAEGLPHPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
YSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=758841 P7I83_RS02490 WP_264974572.1 547483..548208(-) (comF) [Pseudomonas aeruginosa strain 2021CK-01157]
ATGTCGTTCCCGCTTCATCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCTGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGTCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCACCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
TACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382
  comFC Legionella pneumophila str. Paris

38.034

97.095

0.369