Detailed information NTG0758749

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P7I85_RS07000
• Genome accession: NZ_CP124622
• Coordinates: 1496706..1497710 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2021CK-01159
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1491706..1502710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I85_RS06970 (P7I85_06970)	fghA	1491798..1492649 (+)	852	WP_023115121.1	S-formylglutathione hydrolase	-
P7I85_RS06975 (P7I85_06975)	ispF	1492720..1493193 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P7I85_RS06980 (P7I85_06980)	truD	1493190..1494257 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
P7I85_RS06985 (P7I85_06985)	surE	1494245..1494994 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P7I85_RS06990 (P7I85_06990)	-	1495027..1495662 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P7I85_RS06995 (P7I85_06995)	-	1495708..1496601 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
P7I85_RS07000 (P7I85_07000)	rpoS	1496706..1497710 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P7I85_RS07005 (P7I85_07005)	fdxA	1498137..1498460 (-)	324	WP_003119354.1	ferredoxin FdxA	-
P7I85_RS07010 (P7I85_07010)	mutS	1498527..1501094 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
P7I85_RS07015 (P7I85_07015)	-	1501220..1502227 (-)	1008	WP_021265158.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=758749 P7I85_RS07000 WP_003113871.1 1496706..1497710(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01159]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=758749 P7I85_RS07000 WP_003113871.1 1496706..1497710(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01159]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653