Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QJQ47_RS20765 Genome accession   NZ_CP124612
Coordinates   4383582..4384178 (-) Length   198 a.a.
NCBI ID   WP_034039736.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY3649     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4378582..4389178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJQ47_RS20740 (QJQ47_20755) - 4378928..4379125 (-) 198 Protein_4123 TetR family transcriptional regulator -
  QJQ47_RS20745 (QJQ47_20760) - 4379218..4380801 (+) 1584 WP_003121915.1 flavin-containing monooxygenase -
  QJQ47_RS20750 (QJQ47_20765) - 4380798..4381685 (+) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  QJQ47_RS20755 (QJQ47_20770) - 4381759..4382298 (+) 540 WP_003103931.1 CbrC family protein -
  QJQ47_RS20760 (QJQ47_20775) - 4382311..4383459 (-) 1149 WP_034039738.1 acyl-CoA dehydrogenase family protein -
  QJQ47_RS20765 (QJQ47_20780) recR 4383582..4384178 (-) 597 WP_034039736.1 recombination mediator RecR Machinery gene
  QJQ47_RS20770 (QJQ47_20785) - 4384257..4384583 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  QJQ47_RS20775 (QJQ47_20790) dnaX 4384629..4386722 (-) 2094 WP_058199844.1 DNA polymerase III subunit gamma/tau -
  QJQ47_RS20780 (QJQ47_20795) - 4386759..4387625 (+) 867 WP_003120462.1 substrate-binding periplasmic protein -
  QJQ47_RS20790 (QJQ47_20805) - 4387879..4388256 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21143.40 Da        Isoelectric Point: 6.0063

>NTDB_id=758678 QJQ47_RS20765 WP_034039736.1 4383582..4384178(-) (recR) [Pseudomonas aeruginosa strain NY3649]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFGEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=758678 QJQ47_RS20765 WP_034039736.1 4383582..4384178(-) (recR) [Pseudomonas aeruginosa strain NY3649]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGTGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCGGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48